Basic Information

Gene Symbol
-
Assembly
GCA_026256485.1
Location
JAGTYB010000003.1:4648472-4664254[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0011 0.13 13.6 0.1 2 23 672 693 671 693 0.97
2 17 0.013 1.5 10.2 4.9 1 23 699 722 699 722 0.89
3 17 0.0052 0.63 11.4 0.2 3 23 727 748 725 748 0.94
4 17 0.0072 0.86 11.0 0.1 2 21 757 776 756 777 0.92
5 17 0.00033 0.04 15.2 1.1 1 23 785 807 785 807 0.97
6 17 0.0039 0.47 11.8 2.0 1 23 813 835 813 835 0.97
7 17 0.00058 0.07 14.4 2.6 1 23 841 863 841 863 0.95
8 17 9.2 1.1e+03 1.2 5.5 3 22 871 890 869 890 0.92
9 17 0.098 12 7.4 2.7 1 23 1175 1198 1175 1198 0.98
10 17 1.3 1.6e+02 3.9 1.6 1 23 1222 1244 1222 1244 0.88
11 17 0.061 7.3 8.1 1.1 1 23 1252 1276 1252 1276 0.93
12 17 0.00066 0.079 14.3 1.8 1 23 1280 1302 1280 1302 0.98
13 17 0.0015 0.18 13.1 0.3 2 22 1314 1334 1313 1334 0.93
14 17 0.00047 0.056 14.7 0.4 1 23 1342 1364 1342 1364 0.94
15 17 1.6e-05 0.0019 19.4 1.6 1 23 1370 1393 1370 1393 0.97
16 17 7.2e-05 0.0086 17.3 0.2 1 23 1399 1421 1399 1421 0.98
17 17 0.0053 0.63 11.4 1.1 1 21 1427 1447 1427 1448 0.94

Sequence Information

Coding Sequence
ATGGGTAAGACATTGAATCAGTTAAGTTTGACTGAGCTGAAGGCGGAATTAACTAAACGAGGTCTTCCTACTGCTGGATCGAAAAATGACCTCATTATTCGCCTGCAGGATTATTTAACCCAGAAAAACGAAGATTTGGATACATTTCAATTCGAAGTTGAAATGGTAGAAGAACGAGTAAGTACTAGTTCCGATATGTCATCCATGATGGCTGTTCTCCTTGCAAAATTTGAAGAACAGAAAGATCAAATGGAACAGCAACGTAAAGAACAAAAGGATGAACAGAAAAATCTTCTTGAACAAATTGAGACACAACGCAATGAACAAAGAGAACAAATGGAACAACAACGAACAGAGCAAAAGAGTGAACAACAGAATCTTCTCGAAAAAATTGAGAAACAACGTACCGAGCAAAAGAGTGAACAACAGAATCTTCTCGAAAAAATGGAGAAACATCTAGAAGAACATCGCGATGAGCAAAAGAATCTTCTAGAAGAACAGAAAAATCTTTTAGAGGGAAAGCTTGGTGATTTCGAGAAGAAGTTCACTGCTCTTGACGAGCGTGTTGAAGAAAACAAAGAAAAGCTGTTGGCAATGGACACAAAGTTCGAAGAGAAATTCCAAGACATTACTAAAGAGTTGGACAAGGTTCGAAAAATTAAGGCCCGAGAAAGTTCTGGTGAGTATTCAAAGAAGAAGGAAATGCATCCACCAACCtttgatggacaaagttcttggtcgatctacaagaaacagtttgaggcagctgccacaacaaatggctgggatgacgaagacaaatgtatagcgctgactcttgctcttagaggtcctgctgctgagttgttacaaactttaccaccagaaaagaatgaaaccagcgagacggagctgctcgatgctggaactgtaacaagacaggacatctccagcggcagtgcagattgccaccaagaagaaaTGCTTGCCAGCACTGTGGAAACAGGAATATTGCCCAACAACAGAACCAACTTCGAGGGGCAGAAGCTGGTTTCTGGTATCGATGGCCCCAGAACCACAATTCAAGTCTCACAAACTAAACGAGACAACAAAAGTCTGACAGTAGAGGCAACCATAAACAATAACCAACACGTGGCTACAATTGACACCGGTGCCACCGCCTCTATTGTACGAAGAGACTTGGTAAAGATGACGTGGCTACATAACATCAACAGCTATCGTCTGAAGACCGCCACAGGAGAAGCAGCAAGAGTGTACGGAGAAGTTCGTCTTGAGATCCGTATAGCAGAACTAAAGTTTTTACATGTGTTTTTGGTGGCAGATATATGTGACGAGTGCATCATTGGAATCGACTTTATGAAGGAGCATGGAATCATTTTGGATATCGGTAATCAAGTCCTGAAATACAGAAATGTAGAGATTCCAATGGTCTATGGCAGCGAAAACTCAACAACAATTAGAACTGTCATCAAAGAAGACATGTGCCTGCCTCCTTCTTCAGAAGTTTTTGTGTGGACGAAGTTAAAGGGGAACTGTGGAAACCATCGATACCTCATGGTCGAACCAGAAGTTGAGCAGAGTTCCGAAAACATCATCATCGGGAAGACTCTTGTGGCACCAAAGAACAACATGGTACCTGTACGGATACTTAACATCAAACCGTACCCAATCAAGCTTAAGAAAGGAGAAGTTGTTGGGCAATGTGAATCTGTGTCCGCAATAACTAAGATCAACGAGATGGACACACAGATGACTATGAACTCTGAGAAACTAAAGACTCAAATTCTCAAACCAGACAACTTGAGTCAACATCAGCTTAATGTTGCTGGAAGGCTTCTTCATGAATATGCTGATATCTTCTCttcacccagcgggcaatacggccgaacacaactggtgcagcatcgaatcgatacaggagacgctaggccgattcgtcaaccagcaagacCTCCCAGCGTCTCAAACACCATGATGGTTCAAATAACAACCGATAAGACTGGCCCAAAATTAGTTTGTCCTGTGTGCGATAAGGCTCTAGTCTCACTCAATGGTTATGTAAAGCACATGAAAAAACACGAGCCCCCTGGTGGTTACTTATGCAATTATTGTGATGAACGTTTTTGTCTTGAAGATCACCTCAAAAAACATAAAGACGAAAAACATAAGGTCCTTGCATGCCAAATATGTCATGCGACATTTGATTCAGCTCAAGAATATCGCATTCACATTAATGAAGTTCATCAAGGAGTCGATCGGAGAATGATCAAATGTGAAAAATGTGGCATGGAATTCAAAACTGCCCAAGCCGCCAAAAGGCACACGGAAACGCAATGCGGTCAAATAAAACCCCATCCATGTGATCAATGTGAGATGGCATTTTATACGAAATACAATCTGGCCGAACACAAAAAGATTCACACTGGAGAGAAAAAGTTCTGCTGCAGTTATTGTGGTAAGAGTTTTTTGAGTAACGGACGATTGGTTATACACGAGAGGAGTCACACCGGTGAAAAGCCATATAAGTGTGATGTCTGTGGAAAATGCTTTGCTCATCGTGAGAGCATTGTCACTCATTCTTCAATACACACCGGTGTTAAATTGGTTGTTTGTAAGTGCTGTGGCTCAAGATTCTCTTGCCATTCGAATCTTATCAAACACAGACGAACACGTCCCGATTCATGTGGTTTGCCGATTTATAACTCCACCAAAGAGACAAAACGAAATGGAAATTCAAGAATTCCTCCGGGATTGATGTCTTCTGAAATAAGAATTGTTCGAGCAAGCAAAGTCATAAAACCCAATGAAGGGCATAAAAAACCCAAGGCTGCTAATATCAATGAAGGTCAAAAGAAACCAAAAGTTACCAAGTCTAGAGCAAAGGCTAAAAAAGTGAAATCCGATTCAGAAACGGATGATAGCAATGATGATGAAGTAATAATAGAACGACCAAAGCGAAGTACTCGACCAAAAGAACACCTTCCTGCGGAAGAAACTGATATGAAACCCCCACAATCACCATCAAAAGACTTTGATTCCGATAATTATAGTGATGATCCACTATTTGATAGTCCAATGCACTCAGTTGATTCCTCTGATAGTGAAAAACCAATAATAGTTAAACCAGAGCCATTGGAGAAAAATCAATTTGAAGTGGTAACCGCTCCAGTTAAAACAGAAGAAGAACCCGAAGATTTTTTCAATGACCATGATAATATTTTGGAACAATTTCTATCTGAATCTGCACTTGATGTGAAATTTGAGCCTTTGGTCGATATTAAAGTCGAAGAAGACATTAAAAAAGATGAGTGTTCACTCTTAAAGCCTATGGAAGAGGTTTTTGAAGATGCAAATGAAAAAAAGACTCCAACCAAACGAACTAGGAGAAAAAAATCAGATTCTGTTCCTGGAAATCAAATTATTGAAAAAGAAGAACTAGATCTGGATGAGTCAGTTCCAAAAAAGAGACGTTCACGTGGAGCGTTGCGGAAAAAACTTAAATTCTTCAAAAAAGATCGAGTGTATGAATGCAAATTTTGTGCTAAGGTTTATCATATTAAAAAACCATACGAGAAACACCTGCGAACATTGCATAAACAAACCGATGAAGAGCTTCGAGAGTTGTTTAAGGACGAAGACAAAGACATTCCAGATGAATATGTACACCGTTGTCCTATTTGTTCGAAGATCTATCTTATGGCTAAACGACTGACTACTCACTTGACTTTTCATGGTCCCGATGGAAGTCTTATTCACAAATGCCCAGGCTATTGTAAAATGTATTTCCGAACAAAAGAAGAAGCCATGGATCATGCTAAGGAAATGCATAAGGAATGTTTTCATTGTAACATTTGCGATAAGTATTCACAGTCACCAGATGCCCTAAAAATTCATAAACGAACTCATTTCGAGCAAAGAAGACAAGCCAATCGCAATTTGATTTGTGATAAGTGTGCCAAGTCTTTTGCAAGTCGGACATCGCTTAATGATCATACAAGATCAAATTGCGGAAAAGATCCACTCTATAGGTGTGAGATTTGTGATAAGAAATTCAGCACAGCTGGCATTTTGAAGACACATTCTTTGCTTCATAAGGATGAGACACCTTATGCGTGTGATAAATGTGGAAAGACATTTAAAATTAAAGCACAATACAAGACGCACATTAAGATGAAGCACACTGATTATAAACCTTTCAAGTGTGAGCTCTGTCCAAAAGCATATCCTTACCGAGAAAGTCTTTTAACACACATGACTGTTCATACAGGACTCAAACGTTATGCATGCAATGGATGCAGCAAGCGATTCACTTGTATTTCAAATCTGCAAGCTCATCGTAAAGTCTATGCCGATACTTGTGGATTACAGCCGTTAAATTCAAAGCCAAGCACTTATTTAGGTGTGCAAAAGGGCATGCTCCTAATGGGAACAAAACCTTCTTATTAG
Protein Sequence
MGKTLNQLSLTELKAELTKRGLPTAGSKNDLIIRLQDYLTQKNEDLDTFQFEVEMVEERVSTSSDMSSMMAVLLAKFEEQKDQMEQQRKEQKDEQKNLLEQIETQRNEQREQMEQQRTEQKSEQQNLLEKIEKQRTEQKSEQQNLLEKMEKHLEEHRDEQKNLLEEQKNLLEGKLGDFEKKFTALDERVEENKEKLLAMDTKFEEKFQDITKELDKVRKIKARESSGEYSKKKEMHPPTFDGQSSWSIYKKQFEAAATTNGWDDEDKCIALTLALRGPAAELLQTLPPEKNETSETELLDAGTVTRQDISSGSADCHQEEMLASTVETGILPNNRTNFEGQKLVSGIDGPRTTIQVSQTKRDNKSLTVEATINNNQHVATIDTGATASIVRRDLVKMTWLHNINSYRLKTATGEAARVYGEVRLEIRIAELKFLHVFLVADICDECIIGIDFMKEHGIILDIGNQVLKYRNVEIPMVYGSENSTTIRTVIKEDMCLPPSSEVFVWTKLKGNCGNHRYLMVEPEVEQSSENIIIGKTLVAPKNNMVPVRILNIKPYPIKLKKGEVVGQCESVSAITKINEMDTQMTMNSEKLKTQILKPDNLSQHQLNVAGRLLHEYADIFSSPSGQYGRTQLVQHRIDTGDARPIRQPARPPSVSNTMMVQITTDKTGPKLVCPVCDKALVSLNGYVKHMKKHEPPGGYLCNYCDERFCLEDHLKKHKDEKHKVLACQICHATFDSAQEYRIHINEVHQGVDRRMIKCEKCGMEFKTAQAAKRHTETQCGQIKPHPCDQCEMAFYTKYNLAEHKKIHTGEKKFCCSYCGKSFLSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGSRFSCHSNLIKHRRTRPDSCGLPIYNSTKETKRNGNSRIPPGLMSSEIRIVRASKVIKPNEGHKKPKAANINEGQKKPKVTKSRAKAKKVKSDSETDDSNDDEVIIERPKRSTRPKEHLPAEETDMKPPQSPSKDFDSDNYSDDPLFDSPMHSVDSSDSEKPIIVKPEPLEKNQFEVVTAPVKTEEEPEDFFNDHDNILEQFLSESALDVKFEPLVDIKVEEDIKKDECSLLKPMEEVFEDANEKKTPTKRTRRKKSDSVPGNQIIEKEELDLDESVPKKRRSRGALRKKLKFFKKDRVYECKFCAKVYHIKKPYEKHLRTLHKQTDEELRELFKDEDKDIPDEYVHRCPICSKIYLMAKRLTTHLTFHGPDGSLIHKCPGYCKMYFRTKEEAMDHAKEMHKECFHCNICDKYSQSPDALKIHKRTHFEQRRQANRNLICDKCAKSFASRTSLNDHTRSNCGKDPLYRCEICDKKFSTAGILKTHSLLHKDETPYACDKCGKTFKIKAQYKTHIKMKHTDYKPFKCELCPKAYPYRESLLTHMTVHTGLKRYACNGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSTYLGVQKGMLLMGTKPSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-