Basic Information

Gene Symbol
SNAPC4
Assembly
GCA_026256485.1
Location
JAGTYB010000039.1:2447011-2452614[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.097 1.6e+02 3.3 0.1 22 46 232 262 220 262 0.75
2 5 4e-11 6.8e-08 33.3 0.1 1 44 268 312 268 314 0.94
3 5 5.5e-15 9.3e-12 45.7 0.3 2 43 324 369 323 371 0.96
4 5 8.8e-10 1.5e-06 29.0 0.0 4 44 381 422 378 424 0.90
5 5 2.9e-14 5e-11 43.4 0.1 3 44 432 474 430 476 0.96

Sequence Information

Coding Sequence
ATGGAATCTCCAAAGAAAAAACCCAAATCATCAGCTCGAAATAACGAATGTGAAACATCTGACAGTGATAATAGTTACACTGAAGATGAAGACGATGATGATGAGAGCTGTTCCGACGAGGACGATGATGTTATTAGTTCAGATGATCCCGACCAATTCCATTCCGAAGAATTCGATTTCGATTACTTGGCTAGTGTTGTCAAAGTGTTGGAAGATCATGCTGAAGTCAATATGGAAAATTCAATTGTTCTCAATCGAAAATTACAAGAAACAATGGAAGAATTACGAATTAAAGTTGTTTCAATGCTCAACAAGTGTCGCGAAATATACGAAGAGAATCAACAAAAACTTGCCAATCCATTAACCATGACATCTTATTTAAAAGGCATTGGAAGTTGTGGTAGACCGTTTTTTAAAGACAAAACTGGCAGACGTTGCCCGCCAAATCCAGATTACAAGTATCGCAGTGAGATTGAAAAAGAATTCTTCCCTAGTGATTTGGAACTGTATCCACATTTCACCTGGACTGCTAGAGATAAAGTCGGAATACTACAAGGGATCAAGGAACAGGCTATTGAGTACATCGAACGAAAGGAATCATACGAAAAAAAACTTGCCAAAACTACTCCCTTAAGTAAAAAAGTTAAACTACATTCATTGAAACTCAATAAACTCCTAGACAAAGTCGataatgactttgaaattgattggaatcaaatatcagtacacaatttgggttcacgtcatacagcaaatagttgtttagcaagttggaatgcatatttaaagcccgaaatcaatcgtgatgaatggacagaagaggagaatattaaacttaacgaacttgcaaagaaatatcaatttcaggattggattgcgatagcatcagaaatgccacgtagatctgattatcaatgttttgttcaatatcAGACTGTGGTGTCGATTAAAATGCGTGAAGATAAAGGCGAACGCTGGACTAAGGAAGAGGATGATTTATTATTGTCGCTTGTAGAAAAATATAGTATGGGCAATGTAATAAGATGGAATCCAATATGTTCACAGCTGCCAAATCGTACGAAAAAGCAGTGCTTTGCGCGTTGGAAATATAGTATTAATCCTAACATTTCAAGAGCTCTATTTACGCCCGAAGAAGATTGCATTATCCTTGCCGCTGTCGAAGAGTTTGGCGAAAACTTCAATTGTTTTCCCAAAGATCTATTTCCTAATCGAACAGTTGTCCAAATCCGCAACAGATATAACAATTCAATTAAATCCCGCGGCACAACCCGTCACTGGTCACCCGAAGATGACCGATTGCTACTTGATCTTATAGCAAAATATGGTGAACACGATTGGAAAAATATTTCCGCCTCAATAGAAAGTCACACTCGAACCAGTTGTCGTACCCGCTATTTAACTATTGCAAAATTTTTCAAAGACAACCCCGATGCCACTGTTGAAGACATTCCTAGAAAAAAACGTAAAGCCCGATCGAATGTTACTAAAAATAATTGGGTAGAAACAATCACAGGTTTAACAGAATCAAATCCAGTCAAAGAACCTGTGGAAAACCCTAGCTTATATCGATCCAGATTACGTCACAATGAAATACAGTGGTATAATTTTTTGAAATACTCATATGACTTCAGATTTGGTGAAGGTTATAGCAAGGTTCCTAAATGCTTGGCAAGTTTAGAGTTTGTTCGATATGTTTTCGAATGCAAATTAAATATGCCAGTTGTACTTAAAAAGGGGTATGCTAAGGGTTTTGTACCGGTGAGCTTGGAGAAACTTATACGACTCCATGATCAAGATGAAAAAACTTTAGTTTTCGAGAGACCTGATGTTGGTTTTAAATTACCACCTAGTTACAGCACTCTTTTAGCGTTTCGAGGACTCTGTATACAAGCTTCGTTCAATGGTAATGAAGATAGAGTTGAGGCAAGCAACATTAAACTACCTATCAATGTGATTGAAGCGAGAAATAAGTTCCGCCAACGACTTATAAGTCTTTTATATAAAACAACTCTTCTAAGTCGACTTGAGCCGAAGACTTCCGTAGAGCACAATACATTCGAAGTGATTTTCGATGCAAGCACTCAAATGGGTCAGGCTGCCGCTATTAATTTGGCTGAATTGAAAGTAGCTCAAATGAATAAATTAGCTGAAAATCTTAAAATAGCCCAACAGAAAGCAGATAAAAATAGACAATACAAAGAAAAGTTAAAAAGAATAGAAAAGAAAAAGAATCAAAACGATCAAAATAACGACATCACAAATAACATAAGCCAGCAACAGCCAAAACAAGAAAATGCTCACATAAATGATCAAATACAAATCATAGATGAATCACAGCACAACAATGTTTCACAACTCATAACTCCTGTTAATCAATCGAGAATTGTCGAACTGAGAGATGAACCGAATTTAATTAACTTAGATAATTCTTTTCAACTAAATTCACAGCAACAGCCACAAGAGATTATAATAGATTTAGAAAAATCCTCTAAAACACAGTCATTACAACAATCTAACGATTTTATAATAGAATTAGAAATGCCCTCCCAATCGATAACAGAAGAACCACCTGTCTACGAAACTTTAACAGTAGCAGATCCAAATATCGATACTAAACATTTTCCTAAATATAAAAGTTTTGCAACACAAAAAGCAAATAGAAAAAGAACATTTGAAGAAAGTTTAATCATAATGGAAGAATCATCTCAGTCGCAGATATTTGAATCAGCGGCAAAAATAGTAAAACGTGAAAAAGAATAA
Protein Sequence
MESPKKKPKSSARNNECETSDSDNSYTEDEDDDDESCSDEDDDVISSDDPDQFHSEEFDFDYLASVVKVLEDHAEVNMENSIVLNRKLQETMEELRIKVVSMLNKCREIYEENQQKLANPLTMTSYLKGIGSCGRPFFKDKTGRRCPPNPDYKYRSEIEKEFFPSDLELYPHFTWTARDKVGILQGIKEQAIEYIERKESYEKKLAKTTPLSKKVKLHSLKLNKLLDKVDNDFEIDWNQISVHNLGSRHTANSCLASWNAYLKPEINRDEWTEEENIKLNELAKKYQFQDWIAIASEMPRRSDYQCFVQYQTVVSIKMREDKGERWTKEEDDLLLSLVEKYSMGNVIRWNPICSQLPNRTKKQCFARWKYSINPNISRALFTPEEDCIILAAVEEFGENFNCFPKDLFPNRTVVQIRNRYNNSIKSRGTTRHWSPEDDRLLLDLIAKYGEHDWKNISASIESHTRTSCRTRYLTIAKFFKDNPDATVEDIPRKKRKARSNVTKNNWVETITGLTESNPVKEPVENPSLYRSRLRHNEIQWYNFLKYSYDFRFGEGYSKVPKCLASLEFVRYVFECKLNMPVVLKKGYAKGFVPVSLEKLIRLHDQDEKTLVFERPDVGFKLPPSYSTLLAFRGLCIQASFNGNEDRVEASNIKLPINVIEARNKFRQRLISLLYKTTLLSRLEPKTSVEHNTFEVIFDASTQMGQAAAINLAELKVAQMNKLAENLKIAQQKADKNRQYKEKLKRIEKKKNQNDQNNDITNNISQQQPKQENAHINDQIQIIDESQHNNVSQLITPVNQSRIVELRDEPNLINLDNSFQLNSQQQPQEIIIDLEKSSKTQSLQQSNDFIIELEMPSQSITEEPPVYETLTVADPNIDTKHFPKYKSFATQKANRKRTFEESLIIMEESSQSQIFESAAKIVKREKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00984169;
90% Identity
-
80% Identity
-