Eeuc001503.1
Basic Information
- Insect
- Epistrophella euchroma
- Gene Symbol
- -
- Assembly
- GCA_947049305.1
- Location
- CAMRIP010000008.1:8946337-8950180[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.9 2.4e+02 3.3 1.8 3 21 574 592 572 596 0.91 2 11 0.00017 0.021 16.1 0.7 2 20 618 636 617 638 0.93 3 11 1.2 1.5e+02 3.9 0.3 1 23 659 683 659 683 0.91 4 11 0.00072 0.09 14.1 0.3 1 23 688 712 688 712 0.93 5 11 5.5 6.8e+02 1.9 0.2 2 19 740 757 739 760 0.77 6 11 1.1e-05 0.0014 19.8 3.1 2 23 787 809 787 809 0.98 7 11 0.0011 0.14 13.5 0.1 1 21 814 834 814 835 0.94 8 11 0.33 41 5.7 0.1 2 23 864 885 863 885 0.92 9 11 0.028 3.5 9.1 5.5 2 23 901 921 900 921 0.97 10 11 5e-06 0.00062 20.9 3.8 1 23 927 950 927 950 0.96 11 11 0.1 12 7.3 0.9 1 13 971 983 971 983 0.92
Sequence Information
- Coding Sequence
- ATGCTTGAAGAGGACCTCGATGATACACACTTGTGCATCAAATGTAGTGCCACAATTGTTGGCCTCGATAATTACATCCAGCATCGCAAAACCAATTGTGTTAGCAAGACAGGGACAAGAGCCACCATTGTATCCCATGGCTATGGAGGTTTTGAGTATCCGGGTCCTTCGGGCTATGTGAAGAATGAAGTAGAAGCTGTTGGAGGCAAGACTTCGAAAACTTTAAATGATCCGTATGATTTGCCTTATGAATTGGGTGCAGATGTATTCTTTTCTTCGCTGCAACTTCAAAGTGTTCAAGCAAGTGGAACAGGAAATGCTGGAAAGAATTCTTCGATTCAACCGATTTCTGCTAGAAAAGTTGCAAATTCTGGAAGAGATGAGACCGAAGGTGATGATTGGCAAGATGAAGAACAAAATAATTCCGATAGTTTGATGAAGGTTGTTAGGGATATTGGAGAAACCAAAAAGTTCGAACCAATATATCAACCGATAATTACTTTTGCTCATGGATATCCAGAGGCCGAACAAAGTgacgatgaagatgaagatattGATGAGTTCGATGAAGACGATGAAGATGACGAAGATTATGTACCAACTCCGTATTCTGGAGGCAAATGGAAGCCTGGTAGTCAGCCAGGTGGTAAATGGAAAGGCAAAATTCATCATGCGGTTCCGAGTTCTTCGGGTGGTAAATGGCATAATAAGTTTGTAGCCAATGAGAGTAATAAATGGAAACCTTTTAAAAAGTACTTGGAACCAGAAACCCATCACAATCGTCCAAAACTTTCATGCAAAAAGGATGTTGTACCAAAAGATGAGCCATTACCTGAAGTCCCACAAAGTGGTGGTAAGTGGAAACCAGGAAGTTCATCgggaaaaacattgaaaatccCTCAGACCTCTTTGAGTGGTGGCAAATGGAAGTCATCTGAGGGTATTGAATCACCAGATATGCAAGCATCTACAGGAGGCAAGTGGAAACCTGAAGACGATCCATCAACTAGTGGCAAATGGAAACCAGGAAATTTAGTTATTTCGAAAATAGCTTCGCTACAAGGTGTAGCAGAATGGCATCAACCATCAGAAACATGGGAAGATGTCGGTAGTGTTCATCCTCCAATTGAGCATACCAAAGGCAAATGGGTTCCAGGAACAACATTTGAGGAACTCGAATATAAGGATgagAACATCTCAACAGCACCTCAAGACTACTGGTGTAATATTTGCTGCCGCAAACTTaagacaaaaacaattttcgacaaACATCTTAAATCAGCTATGCATTTGAAGAAATCAGAAACCGAAGAGCAACTAGAACGAGCCGGAGTAAATAAGCAACTTGAAGTAACTTCGCAAAATCTTCAAGTTTCTCCGCCAGAATTTCTATTGAAACGAAATATCTCTCCCGCCGAACCAGCTGATCCAAATAAACGGCTAAGACGAAAAACCTTTGTGAAGTGTGAAATTTGCAAACATCGCATGCAAAGTTATTTAATGGGCAAACATTTAATATCTCACTATCACTATGTCCGAAGACGTACCGATCTAGCCAAATCATATGGCATGGTTCTTGATAATATTCATCAGATAGTTCTTCAATCACCGTTTCAGTGTAGCCCCTGTAGGTTCTATGCCAATGACGAGGATCAGTTTTTAAACCATTGGAATTCGGTAGAGCATCGTGATCGAACTGAAGGTTCTGGGAGATTTTGGTGTAGTTTTTGTCAATTCGAATGTGAAGACAACAATCAGATGCGTCGTCATCTTCTCGGAAGTGACCATCGAGAAGTGATAATGGCTATTAATAGATCGGTTCCGATAATCATAAGCAAAAAGGTCTCCATCAAATGTCCCAAATGCCATCGAAGTTTTCGGTATAACATAGAATTGCGTCAGCATGCACTTCGGTGTGAGGTATTTAAGACTGAAGACGCAATCGGAACAGCATCAGATGAATATCAGTCAAGGTTCCGCTGTGCCTTGTGTCCCGATGAAGTACTCAAGTCTCAGATGGCTCTTCAGAGACATGAAAAGTTCAAGCACAATAAACGACGATTCTATTGCTCGATTTGCAATGAAGAGTTCAAAAGTCCTGAAGCAGCTATTAAGCACCGCAAGACCAAGTGGCATCGACAGAATTCCAACGCAAAACTGAATAAAATGAAGAAGGAAAGAATCATCAAGGTTAAGGTGGAAACTGAGGATAATTTAAAATGCGAAAAGTGTCATCATGTGTCCTCTTCGGATGTCGAAGCCATGTTACATCAAATAAACAATCCTAATGGCTGTAAAAATACCGAAGACAGtccaggagaaaatcccaaaaagaatTCAACAGTAAGCTCTATGAGAAAGTGCTCATACTGCAGGGAATGCTTCCCAACTAAATCCGAACTAAAAAATCATCTCAATACAGTCCATCCTGAGCTGAAGCACATATGCCCACTTTGTGGCGAAGCCTTCACTCTGCCTCAAGAACTTAGTTCCCATAGAAGATACAAAATATGTGTGGCTTCAACTTCTAAAAAACCACCAGCCTCCATTGAAACAACTTCATCCCAAAAAGATCCCAAGAAATCCTGGAAATGTCCAGATTGCACATTTAGCTCTGCCTATGAATCGGAGTTGATATTCCATCGGATTATCCATTCGGAGGGTGGTCTGGAGGCACTCGAATCGTCTGgcacaaaaattaaatgccAACTTTGTGAGAAATCATTTGCAAAACATTCACTTCGGCATCATTTGCGTCAGCATACCAACGAAAAGATTTTCCAATGTGAAATTTGTAAACGGTCATTTTCGAGGCGGCATAATTACAAGGAGCACATGGAGTACGTGCATTCTGTTGGGGGTGCAGTAAGGAAACGCCATAAGGGCGGCAGCCGCTTAAAGGAGGAGAGTTTTATATGCGATACATGTGGCAAAATATTTCGGACAAAGTGA
- Protein Sequence
- MLEEDLDDTHLCIKCSATIVGLDNYIQHRKTNCVSKTGTRATIVSHGYGGFEYPGPSGYVKNEVEAVGGKTSKTLNDPYDLPYELGADVFFSSLQLQSVQASGTGNAGKNSSIQPISARKVANSGRDETEGDDWQDEEQNNSDSLMKVVRDIGETKKFEPIYQPIITFAHGYPEAEQSDDEDEDIDEFDEDDEDDEDYVPTPYSGGKWKPGSQPGGKWKGKIHHAVPSSSGGKWHNKFVANESNKWKPFKKYLEPETHHNRPKLSCKKDVVPKDEPLPEVPQSGGKWKPGSSSGKTLKIPQTSLSGGKWKSSEGIESPDMQASTGGKWKPEDDPSTSGKWKPGNLVISKIASLQGVAEWHQPSETWEDVGSVHPPIEHTKGKWVPGTTFEELEYKDENISTAPQDYWCNICCRKLKTKTIFDKHLKSAMHLKKSETEEQLERAGVNKQLEVTSQNLQVSPPEFLLKRNISPAEPADPNKRLRRKTFVKCEICKHRMQSYLMGKHLISHYHYVRRRTDLAKSYGMVLDNIHQIVLQSPFQCSPCRFYANDEDQFLNHWNSVEHRDRTEGSGRFWCSFCQFECEDNNQMRRHLLGSDHREVIMAINRSVPIIISKKVSIKCPKCHRSFRYNIELRQHALRCEVFKTEDAIGTASDEYQSRFRCALCPDEVLKSQMALQRHEKFKHNKRRFYCSICNEEFKSPEAAIKHRKTKWHRQNSNAKLNKMKKERIIKVKVETEDNLKCEKCHHVSSSDVEAMLHQINNPNGCKNTEDSPGENPKKNSTVSSMRKCSYCRECFPTKSELKNHLNTVHPELKHICPLCGEAFTLPQELSSHRRYKICVASTSKKPPASIETTSSQKDPKKSWKCPDCTFSSAYESELIFHRIIHSEGGLEALESSGTKIKCQLCEKSFAKHSLRHHLRQHTNEKIFQCEICKRSFSRRHNYKEHMEYVHSVGGAVRKRHKGGSRLKEESFICDTCGKIFRTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00894382; iTF_00664433; iTF_00695069; iTF_00694199;
- 90% Identity
- -
- 80% Identity
- -