Basic Information

Insect: Epistrophella euchroma
Gene Symbol: ush
Assembly: GCA_947049305.1
Location: CAMRIP010000255.1:238892-252771[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.014 1.8 10.0 0.0 1 20 221 240 221 242 0.90

2 9 0.00028 0.035 15.4 0.8 1 23 293 315 293 315 0.98

3 9 0.03 3.7 9.0 1.0 2 21 340 359 340 360 0.92

4 9 0.049 6.1 8.3 2.9 2 21 730 749 729 750 0.93

5 9 0.02 2.5 9.5 0.1 3 21 788 806 786 807 0.92

6 9 0.24 29 6.2 0.1 1 23 852 874 852 874 0.91

7 9 0.014 1.8 10.0 1.3 1 23 880 902 880 902 0.99

8 9 0.0004 0.049 14.9 0.8 1 23 981 1004 981 1004 0.96

9 9 0.43 53 5.4 0.7 2 20 1141 1159 1140 1161 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.014	1.8	10.0	0.0	1	20	221	240	221	242	0.90
2	9	0.00028	0.035	15.4	0.8	1	23	293	315	293	315	0.98
3	9	0.03	3.7	9.0	1.0	2	21	340	359	340	360	0.92
4	9	0.049	6.1	8.3	2.9	2	21	730	749	729	750	0.93
5	9	0.02	2.5	9.5	0.1	3	21	788	806	786	807	0.92
6	9	0.24	29	6.2	0.1	1	23	852	874	852	874	0.91
7	9	0.014	1.8	10.0	1.3	1	23	880	902	880	902	0.99
8	9	0.0004	0.049	14.9	0.8	1	23	981	1004	981	1004	0.96
9	9	0.43	53	5.4	0.7	2	20	1141	1159	1140	1161	0.91

Sequence Information

Coding Sequence: ATGACTTCAACTAACGACACGGAAGACGTTAAGACCGTTCAAACGTTGAACAATTGGTTGGTATATGGTGACACAAACATTTTCCCCGAACCATGTCCACTAATGTTCCTACGATGTCTTTCGTTTGTGTTACAACTGCAGCAGCTCCTTGACTGCACCTCTCGATTTTACGTTGTCATTCGATGGATGCAATATGCTATCCCAAGTGATTTGAATGAGCAAACCGATCCGGTTGCTTCGGCTGACATTGATCAATCAGCCGAACCATCAACAGAAACCCTAATGGAGGAAGAAAATGGCCCGGCTTCGAGTTCGCCTAGAACCCTTTCACCGCCCTCAGAACCAGAAGTTGATGACAGAAATTCACCTTCAGTTCAATCAGATCCCGCTTCGGAAGCGAACTCACCCTCAGAGCCAGACGACTCATCATCAATAGTTCCTGCTGTCGCGGTAACTGCGATTCCTAAACTACGACTGAACGCACTTCTAGCTTCTGATCCTGCTCTCAATCCAGATGCTAGAAATCTAAAGATACTTCATGAAGAATCAACAAAGAATCACCATCAATTGGATGAAACTTTACCTGCTCCTGTCGATCAGAAGCATTCTGTTAAGAACCAAATTCCACCGGCTGTGGAGAATTCACAGCGCGTGAAAGTTTTTATGTGTCTTCCTTGCGGAATTGGATTCTCGTCGAGATCGACTTTGGAAGCGCATCAAGCTTACTACTGTTCTCACAgAAAAGAAGCCGAGGAAGATTCGgcaggtggtggtggtggtagtGGAGCTGGCGCTGGGAGCACATCATCGGGAGATAAATCCACCATCACATCCAGTGGTGAGCCATCAGCGAAATCAATTAAGACTGGCAAGCAATACGCTTGCACACAGTGCTCCTATAGTGCCGATAAGAAAGTCTCATTAAATCGTCACATGCGAATGCACCAAAGCTCTCCGGCCCCAAGTTCGAATGCCTCCAATGGTGGCGATGATAGTTCTAGTCAACAAGTCGATCGTTACTGCTCTGAATGTGATATTAGATTCTCGAATGTTAAAACGTATCGTGCCCATAAGCAACACTATTGTAGTTCCAGACGCAATGACGGcCAAACAACTCCAAAACTAGCTGAACCAAGTGTTAAAACAAGTGGTGGTTCAGTTAGTCCTCCACAGGTGCGAACAAAAACACCAACACCAGCAGCTGTAGCAGCTGCTGCAGCGGCAGCAGCTGCAGTTGCATCACAACCATTTATTGCTCTTCCAACAAATCCCATTCTCATAATTCCTTATTATTTAATTCGAACTGCCAGTATGATTCCAGGACCATTaaccTCAGTATCTCCTGGAGTTCCAAATCCTGAAAGCACATGTTTCTCACTTGAAAATGGATCTCTCAAACCAATGGCTACCGCCTTAAATACTAGTAGCATTACAAATAACCAAATTCCACATGTGGCAACAACGCCACGAACACATCCACCACCATTACCAAGTACTCCATCAATTACAGACACAAATGCAGTTACCCCACTATTAACAGAGAAAAATACACGTGCATCATCTGCAAATAATTGCAGTGATTCTGTGAAACAAACCAAGAAAGACATACCCATAAGAGATTTTGCTCCACTTGATCTATCTCTGCGACGTTCTCCCATCCAAAGATCCCATCGTGTTCGTTCGTCATCTAGTTTTATGACACCAATTGACGATAGAATCGACATTGAAACCATGATGGAGGGCAAGGAGAATTTATCCATTGACAGTGGTAGTATTACACCCGAACAAATAGTTTGTGCTCCCTCTCTACCCAATAGCCCTTCAATGAGCCCCTCGCCGAAGAGAAGAGCTCTCAGTCCCAGAAGCAGCAGTGCGGCTTCAATATCGCCGGTTCCACCTTCTGTTATTGATCATTTGCCGTTGAGATCTATGCTTCCTGCTGACATTGCCATGAAATTAACTGAATCCAATATAATTCCTCCGCTAATTGCAAAACAGAATCTAGAACTAGCTTTTAAACTGTCAACTGCTTCGGCTGCCGCAGCGGCAGTGGCAGTAGCATCAGCTTCGAGCAAACAAAACGACTCCGGGAAGGCATCATCACTTTTAGGACATCCTGGAACTCCTATCAGTGTGGCATCAGCATCTAGTGGACAGCCACAGATTTTCGTCAAACAAGGTGTCTCAAAGTGCAAAGAATGCAACATAGTGTTTTGCAAATATGAGAACTACTTGGCCCATAAACAACATTATTGCTCGGCTAGAAACCAAGAAGATGCCGAAAACAAGACGAGTACTCCACCATCGGGGTCCAGTACTGGAGGAATAGATGCCAATCCAATTGCATATCAACAGTTGATCTGTGCGGCTTGTGGTATAAAATACACATCAATGGATAATTTGAGGGCCCATCAGAAATTTTACTGTCCTAAAGGAGGTGGTGACACTGCATCTGCACCTATTACAAAGGAAAAATGTTCCAAGTGCAAGGTTCTACATGAAATTGGACAGCCATGTCCACCAACAGCGGCTACAGCTCAGCCACAGTGTTCCTATAAATGTCCCGTTTGTGATGTTGTGAGCTTAACTGCTTCCGAAAGCCGCAAACATCTGGAAACTCATGGTAGTGTCAAGGCATTTCGCTGTTCAATCTGTCGCTATAAGGGCAACACATTGcgTGGCATGAGAACTCATATTCGGATGCAttttgataagaaaacttcagacTTTAACGAGGAAAATTACATGTCATGTATATTAGAAGACGATGGCTTAGAAATTCCTAGTCCCGTAGCAATGAGTCAAGAGCAACTATCTCAATTCGCTGCAGCACATCAACAActtcagcagcaacaacaacaacaacagcagcattTATTGCAACAGCAACCATCGacacagcaacaacaacaacactctCCACAGAATCCTCAGCAGATATTCAACTGTGAAATGTGTAACTACTCATCTTCCTACAAAGGCAATGTGATGCGTCACATGAAACTGGTACATTCACAACCTGGTACATCGCCATCGATTTCTCCTGAAGTGGTAATCGAAGAAAGTGAGTCACCATCAGCAATTCAAACCCTAAACGGCGACAACGGTAGCAGCCTTCCAGGGGGTTTCACCATAAAAACGGAACCCTTAGAGCCTATCGCCATAGCTTCTGCCACCAAGAACAGTAATTCCTCCAATTCCACTGCAAATCATCATCCACATGCTCTACATCATTTGGAACCCCTAGCACAAGTCAAATCAGAACCAATGGAAACAGATATTGGTGTAATAAGATCTCTACACTCTCCACTCTCAATTCCTCCACCGCCACTTTTAAATTCAACATCTCCACTATCAGCTGATGAAAATTCCCTTCTAAGAAATAGTACATCATCTGGTGGAATGCCTCTAAATCAGAAATATTGTCAAACGTGCGATATAAGTTTTAATTATATGAAAACCTATTTAGCacataaacaattttattgtaAGAATAAACCAAGAGCCGAAACAGATAGTCCGAGTCCAGTGACACCAGTGCAATCTCCAACTatgttgacaaaaaataaagagaatttGGAAGCTGCGATGTTATAG
Protein Sequence: MTSTNDTEDVKTVQTLNNWLVYGDTNIFPEPCPLMFLRCLSFVLQLQQLLDCTSRFYVVIRWMQYAIPSDLNEQTDPVASADIDQSAEPSTETLMEEENGPASSSPRTLSPPSEPEVDDRNSPSVQSDPASEANSPSEPDDSSSIVPAVAVTAIPKLRLNALLASDPALNPDARNLKILHEESTKNHHQLDETLPAPVDQKHSVKNQIPPAVENSQRVKVFMCLPCGIGFSSRSTLEAHQAYYCSHRKEAEEDSAGGGGGSGAGAGSTSSGDKSTITSSGEPSAKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGGDDSSSQQVDRYCSECDIRFSNVKTYRAHKQHYCSSRRNDGQTTPKLAEPSVKTSGGSVSPPQVRTKTPTPAAVAAAAAAAAAVASQPFIALPTNPILIIPYYLIRTASMIPGPLTSVSPGVPNPESTCFSLENGSLKPMATALNTSSITNNQIPHVATTPRTHPPPLPSTPSITDTNAVTPLLTEKNTRASSANNCSDSVKQTKKDIPIRDFAPLDLSLRRSPIQRSHRVRSSSSFMTPIDDRIDIETMMEGKENLSIDSGSITPEQIVCAPSLPNSPSMSPSPKRRALSPRSSSAASISPVPPSVIDHLPLRSMLPADIAMKLTESNIIPPLIAKQNLELAFKLSTASAAAAAVAVASASSKQNDSGKASSLLGHPGTPISVASASSGQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEDAENKTSTPPSGSSTGGIDANPIAYQQLICAACGIKYTSMDNLRAHQKFYCPKGGGDTASAPITKEKCSKCKVLHEIGQPCPPTAATAQPQCSYKCPVCDVVSLTASESRKHLETHGSVKAFRCSICRYKGNTLRGMRTHIRMHFDKKTSDFNEENYMSCILEDDGLEIPSPVAMSQEQLSQFAAAHQQLQQQQQQQQQHLLQQQPSTQQQQQHSPQNPQQIFNCEMCNYSSSYKGNVMRHMKLVHSQPGTSPSISPEVVIEESESPSAIQTLNGDNGSSLPGGFTIKTEPLEPIAIASATKNSNSSNSTANHHPHALHHLEPLAQVKSEPMETDIGVIRSLHSPLSIPPPPLLNSTSPLSADENSLLRNSTSSGGMPLNQKYCQTCDISFNYMKTYLAHKQFYCKNKPRAETDSPSPVTPVQSPTMLTKNKENLEAAML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01357492;
90% Identity: iTF_00664445;
80% Identity: -