Eeuc029644.1
Basic Information
- Insect
- Epistrophella euchroma
- Gene Symbol
- -
- Assembly
- GCA_947049305.1
- Location
- CAMRIP010000678.1:66961-76267[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00091 0.11 13.8 0.2 1 23 142 165 142 165 0.97 2 12 0.088 11 7.5 0.4 2 23 181 201 180 201 0.95 3 12 0.77 95 4.6 1.5 2 23 342 362 341 362 0.95 4 12 0.0012 0.15 13.4 1.0 1 23 368 391 368 391 0.94 5 12 0.8 99 4.5 0.5 2 23 398 419 397 419 0.89 6 12 0.00064 0.079 14.3 0.5 1 23 451 473 451 473 0.95 7 12 1.2e-06 0.00015 22.8 1.5 3 23 485 505 484 505 0.97 8 12 6.5e-06 0.0008 20.5 2.4 2 23 513 534 512 534 0.97 9 12 7.9e-05 0.0099 17.1 0.3 2 23 540 561 539 561 0.97 10 12 0.00044 0.054 14.8 3.6 1 20 567 586 567 589 0.94 11 12 0.00094 0.12 13.7 0.6 2 23 595 616 594 616 0.91 12 12 3e-06 0.00037 21.6 0.3 1 23 621 644 621 644 0.98
Sequence Information
- Coding Sequence
- atgtttgaCTCGCTGCCTATATGCCGAGTATGTTTAAAAACATCACTTGAATATATTGATTTCGATACACCATTTGAGGTGGACGCCAGCATCAAAGCAATGGACAACGATCTCACGTATCTTGATTGTTTTCAAGCTTGTACTCGTATCGAAATCGAATTCGATGAAAATTGTCCACAAAGTTTATGCAGTTCATGTGGTCTTGAACTTAAAATTGCTTATGAATTTCTTCAAAAAGCCGAATCTGCGGATAAGACGTTACGTGAATTAACTGCAAGtacaaaagttgaaaaattcgaCGATGAAGAAatGAAATGTTTCCTTCAACCTGAATTGATATCATTAAATGATAATTTAGCACTTGAGGATAATCCAGGTCAACATCCAAAAGTGACAGAAAACCAACTGGATGATGagaaAACATATGTGTGCACTGTTTGTGGGGAGCAATTTTTCTCACAGATGGTTCTGAACATACACGTCAACCGTTTACATACAAACAATTTGATGGAAGATCAAAGCAACACAGTAGACAAAGTTGAATGTCAGATATGTGAAATGGCTTTGTCCATAGATAACTTACACACCCATATGCAAATGCACGAAGACGAATCCAACTTTCAAGACAATGACAATAcagagaaaacaacaatttatgaGGAAGTAGTTATAGATGAACCTGAAGATGTCGAATTCGAAATGCTTGATATGACCAATGTTTCTACAGATGAAGAAGAAGTGAGAAATTTACATGAACCTCAAGATGTTAATGACTCTCAAGATGTTAATGACTCTCAAGATGTTAATGACTCTCAAGATGTAAATGACTCGCAAGATGCAAATGACTCGCAAGATGTAAACGGCTCTCAGGATTTAACTGCCTCCGATGGCTATGAACCAGTTGACCAAGATGAAGAGGAGATGCTTTCACAAATTAAAGATGAAACAGATTCAGATTTTAATGTGATAGCAAAAATGATAACGGAACAAGAAAAACATCGAATAAAAAAGGAGAAACATAAACAATGTGAGATTTGCATGAAGCATGTGCGAATAAGTTCGTTTTCTGCCCACATGAAAGTTCATGAtggtgttcGTCAATTTCCATGCGAATACTGTTTTCAAGCTTACTTTTCAAAACGTTCATTGCAAAAACACGTTAACGCTAGCCATTCTGACATTCTGGACTCACGTTGTAAAATTTGTGACGAAACTGTTGAAGGTGACCATATGAAGGCTCATATACAAGAAAGACATTCGCATATAGTAAAGTGTACGGAGTGTGAACACGAATGCCCCGAGTCTAAAATGAAAGATCACATCAAGCGGAAACATACAGAATCCAAAGACTTTTTATGCAATGTTTGCTCCAAAACATTCAGTACGCTTGGCATACTCAATGCTCATTTGAAATATCACGGAAAAAAAGATGCCAATGCCAGATCGGAGGCATGTGATATATGTAGCAAAGTATTCTCTTCGAATCACTACCTAAAAAAACATATGCTTATACATCAGGAGCAACGTAAACTATTAGAATGTACTTATTGTGATAGGACCTATCATTCGAAAAATTCTCTAGAAAATCATATGCGAATCCATACGGGTGACACAATTAAATGCGTTATGTGTGCCAAAGAATTCGGGCGGCAATACGAATTGAATGTTCACATGCGATTTCACACAAAAGAATATCCATTCCAATGTGACCTGTGCCACAAAAAATTTGCTATTAAAGGTCATTTGAGAACGCATATGTGGCGTCATCAAGGTCTAAAGTTGCAGTGTGAAGAATGTGGAAAACTTTTTACTTCCACCAAAGCGTTGCAAGAGCATTCTTTCTATCATTCTGAGATGCCCTACCAATGTCCGTACTGTCCAAAAGCCTATCCTTCGAAACCGAAATTCAAAGTTCATTTGAAAACTGCTCACATGGTGGAATTCTCGAATGAGGAATTACAAAAAATGGCCAAATTTACTGTACCAAAAAGACCTAGATCCAGAAAGTTTACCTTAGTTCAGGCTGATACCGTTATTAAAGAAGAGGAAGTTCATACAAAAACTGAAATTGATTAG
- Protein Sequence
- MFDSLPICRVCLKTSLEYIDFDTPFEVDASIKAMDNDLTYLDCFQACTRIEIEFDENCPQSLCSSCGLELKIAYEFLQKAESADKTLRELTASTKVEKFDDEEMKCFLQPELISLNDNLALEDNPGQHPKVTENQLDDEKTYVCTVCGEQFFSQMVLNIHVNRLHTNNLMEDQSNTVDKVECQICEMALSIDNLHTHMQMHEDESNFQDNDNTEKTTIYEEVVIDEPEDVEFEMLDMTNVSTDEEEVRNLHEPQDVNDSQDVNDSQDVNDSQDVNDSQDANDSQDVNGSQDLTASDGYEPVDQDEEEMLSQIKDETDSDFNVIAKMITEQEKHRIKKEKHKQCEICMKHVRISSFSAHMKVHDGVRQFPCEYCFQAYFSKRSLQKHVNASHSDILDSRCKICDETVEGDHMKAHIQERHSHIVKCTECEHECPESKMKDHIKRKHTESKDFLCNVCSKTFSTLGILNAHLKYHGKKDANARSEACDICSKVFSSNHYLKKHMLIHQEQRKLLECTYCDRTYHSKNSLENHMRIHTGDTIKCVMCAKEFGRQYELNVHMRFHTKEYPFQCDLCHKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFYHSEMPYQCPYCPKAYPSKPKFKVHLKTAHMVEFSNEELQKMAKFTVPKRPRSRKFTLVQADTVIKEEEVHTKTEID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00335316;
- 90% Identity
- -
- 80% Identity
- -