Eeuc017317.1
Basic Information
- Insect
- Epistrophella euchroma
- Gene Symbol
- -
- Assembly
- GCA_947049305.1
- Location
- CAMRIP010000157.1:2049400-2056236[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.5 1.9e+02 3.6 0.2 2 23 170 192 169 192 0.93 2 15 1.3 1.7e+02 3.8 0.0 6 23 202 219 202 219 0.97 3 15 0.019 2.3 9.6 0.7 1 23 225 247 225 247 0.95 4 15 2.5e-06 0.00031 21.8 1.7 1 23 253 275 253 275 0.97 5 15 0.00031 0.039 15.2 0.3 2 23 284 306 283 306 0.91 6 15 0.00011 0.013 16.7 1.2 2 23 314 335 313 335 0.94 7 15 0.00044 0.055 14.8 0.8 1 23 343 366 343 366 0.94 8 15 0.0042 0.52 11.7 2.3 1 23 373 396 373 396 0.93 9 15 3.6e-05 0.0045 18.2 0.5 1 23 402 424 402 424 0.98 10 15 2.5e-05 0.0032 18.7 4.4 1 23 430 452 430 452 0.98 11 15 0.00063 0.078 14.3 1.3 1 23 458 481 458 481 0.91 12 15 0.00027 0.034 15.4 0.6 3 23 487 507 486 507 0.96 13 15 0.03 3.7 9.0 1.2 1 23 515 538 515 538 0.91 14 15 0.0003 0.037 15.3 0.4 3 23 547 568 545 568 0.94 15 15 0.0029 0.36 12.2 0.2 1 17 574 590 574 591 0.89
Sequence Information
- Coding Sequence
- ATGCCATACGTAGTTGCCGCACATAAACTTCTTGAACTTAATCCAAATCCTTCAGAGAAAAACAATAAAGCGGAAAATCATACCAATATGAGTGAtgatttgaatgaatttaaCAACTTTTTGGCCACaggaattaaaattgaagtcaaTGAAGACTCAAATGATCAACCATTGGAATTTGACCAAGGGTATATTCCCGACGATCCTCTGAAAACTAAAATAGAAATTGATGAAGTGTGTGAAGATATAAAATATGACTCTGAGTCAGAAATACCCATTTCTGAGCTCGCTAAACAGTGCAAAGCAGATCAAAGAAACACAAACGTAGACTGCAATAGTTCAACTGCAAGTCCAAATGTCTTTAGATTCAAAAATACTAAACCTGGTGAAGATGTATTTCATATAAAAGACGGGGTATGGCTCGCCAATTCCTATAGCGAGGAAACCACCGACAAAAGAATTAGTCACGAGGAGTTCgacaaatttatcaaaaaaaatttggaactcTCATGTGACCTGTGTCTCAAGCCCATGGTTAACTTCACAGCTCTCCAGGCCCATTTCCAGAAAGATCATAACGCTGGTAAGGCCTATGCTACTTGTTGTGATAAGAAATTCTACTTGCGCGCTCCTTTGGTTGATCATATTTTGCTGCATAAGTTACCTAATTACTTTACGTGTATTCTCTGCTCAAAAGTGCTCACCGGTCGCAAGACCTTAATTGAACACCAAAAGACACATAACAAGAAACTCGTCTACCAATGTCCTGGATGTGACAAAAGCTTTCATCGGAAAATAAATCTTGATCGACACAAAGACGTTCACGTTGACTACTCGGAGCGTACAGTTGAGTGTAGCCAGTGCGATAAACTCTTTGCTTCGAAATTTTCACTCAAACAACACATTTACGACGCCCATAAAAGCGGTTGCAATAATGTAGTTTGTGAATTATGTGGTAAGGTTTGTCGAGATCAACCGTCTTTCAAACGTCATCAATTTGAACATACAAATGcagaaaaagaatattttccATGTGAAATATGCGGCAGTAAACTCTCAACCAAAGACGGTTTGAGAcgacacaaaaaatttcaacatcCAAAAGATAATAaggaatatttttgtaattacTGCGGCCTCCAATCATCAACATCTCGTGCACTGCATCGCCATGTTACGTATATGCACACTGTGGAACCACGTTATAAGTGCACAATGTgtgaaaaagtatttaaaaggGCTCTAAGACTTAAGGAACACTTGGCAATACACAATAAGAATTTCATTTACCAATGTGACAAATGCCGAAAGAGTTTTTGTAGTAAGCCTGCTCTTGAACGTCACCATGAAGTACACTTCATAGAACGACCATTTAAATGTGAAGAGTGTGATAAATTCTACGCGACAGAATATCGACTTAAGCAACACGCCTACAATATGCATCAATATAAGAAAATTTGTGAACAATGCGGTCAAGTATTTCGTGAGAAGGAAACATTTGTTCGACATCTATTTAAGCACACGAATCAACCTAAGCCTTTTTTTGAATGTAAAATATGCGGAGCTAGGCTTTCGAGTAAAAAAATCCTACAGAAACATAACAAATTTCAGCATCTGGAAGATCCAATCGAACAAAATTGCAACCTATGTGGAATAACGGTTAAAAACTTGCAAGCTCTCAAACGACATATgaattttgttcataaataTCAGCGTGAGCACAAGTGTACAATGTGCGACAAAGCCTTCAAGCGAGCTCTGACACTTAAGGTAAgctaa
- Protein Sequence
- MPYVVAAHKLLELNPNPSEKNNKAENHTNMSDDLNEFNNFLATGIKIEVNEDSNDQPLEFDQGYIPDDPLKTKIEIDEVCEDIKYDSESEIPISELAKQCKADQRNTNVDCNSSTASPNVFRFKNTKPGEDVFHIKDGVWLANSYSEETTDKRISHEEFDKFIKKNLELSCDLCLKPMVNFTALQAHFQKDHNAGKAYATCCDKKFYLRAPLVDHILLHKLPNYFTCILCSKVLTGRKTLIEHQKTHNKKLVYQCPGCDKSFHRKINLDRHKDVHVDYSERTVECSQCDKLFASKFSLKQHIYDAHKSGCNNVVCELCGKVCRDQPSFKRHQFEHTNAEKEYFPCEICGSKLSTKDGLRRHKKFQHPKDNKEYFCNYCGLQSSTSRALHRHVTYMHTVEPRYKCTMCEKVFKRALRLKEHLAIHNKNFIYQCDKCRKSFCSKPALERHHEVHFIERPFKCEECDKFYATEYRLKQHAYNMHQYKKICEQCGQVFREKETFVRHLFKHTNQPKPFFECKICGARLSSKKILQKHNKFQHLEDPIEQNCNLCGITVKNLQALKRHMNFVHKYQREHKCTMCDKAFKRALTLKVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -