Eeuc021916.1
Basic Information
- Insect
- Epistrophella euchroma
- Gene Symbol
- -
- Assembly
- GCA_947049305.1
- Location
- CAMRIP010000210.1:715508-723271[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.1e-06 0.00075 20.6 0.4 1 23 86 108 86 108 0.98 2 17 3.3e-05 0.0041 18.3 3.7 1 23 115 138 115 138 0.96 3 17 0.00073 0.091 14.1 1.8 1 23 144 166 144 166 0.99 4 17 2 2.5e+02 3.2 0.0 2 21 244 262 243 263 0.88 5 17 0.00013 0.016 16.5 2.4 3 23 310 330 309 330 0.98 6 17 8e-06 0.00099 20.2 0.5 1 23 336 359 336 359 0.96 7 17 1.1e-05 0.0014 19.8 2.5 1 23 365 387 365 387 0.98 8 17 1.9 2.4e+02 3.3 1.5 2 23 467 488 466 488 0.89 9 17 1.3e-05 0.0017 19.5 1.3 2 23 535 556 534 556 0.97 10 17 2.2e-05 0.0028 18.8 4.4 1 23 562 585 562 585 0.95 11 17 0.0039 0.48 11.8 1.8 1 23 591 613 591 613 0.98 12 17 2.1e-05 0.0026 18.9 3.4 1 23 662 684 662 684 0.98 13 17 1.4e-05 0.0018 19.4 0.2 1 23 690 713 690 713 0.95 14 17 3.4e-05 0.0042 18.3 1.6 1 23 719 741 719 741 0.98 15 17 0.04 5 8.6 4.8 3 21 780 798 779 800 0.94 16 17 1.5e-06 0.00019 22.5 0.6 1 23 806 828 806 828 0.96 17 17 2.3e-05 0.0028 18.8 8.7 1 23 834 856 834 856 0.99
Sequence Information
- Coding Sequence
- ATGAGAGCGCATGAGAAAACTCATTTCAATGAACGGCGCAAGAAATTTAAATCTAAGAGTAAAAGTAGTGATAAATCACGGCAAACCCATGAGAAACATTCTACAGTTGAGACAAGCAAAGAAACTGAACAAAATGCTCAAAACGACCTTCAAGATCAAGTTATTCAGGATTTTGAAAAACTCGAGCTACATCCACTTTTTGGATCGATGTCTTCAAATCAAGATGAAAACACAAACAAAGAACAGAATAGTTTCTTCCCATGTCCCCAATGTGAAAAAACATTCGTGTTGCATTCGGATCTGATTGATCATATGGAAACTCACAGTACGAGTGCAAGACCATTTAATTGCTCAATTTGTTACAAAACTTTCAAACAAGAAGCTCATCTTAAAAATCACACGCAAATGAGTCACACAAAAACAAGGAATTACAAGTGCAGTGAGTGCGACAGGGTGTTCCTTACATTCTATATTCTCAATAAACATATGAGATCACACAAAGGAAAGAAAAACCGCAGTAAAGCTAAATCTAAGCGTGGTTATAAAAAAAGAGTTAATTACCTAAAACACCTACAACAAACTGAATACTCTGAGCAGCTCTGTACCAGTATTGCACAAGATGAAACAAATGAACCAACTGTTGGCGATGACGCAGTTAGTGAGACTGTCaataattcaaaagaaaaacccCAACCAGAAACCGCTATTAGGagaaataatattcaaattacCTGTGCACTATGCTCTGTTGCAGTTGATGCAGATAATTTAACCGAGCACATGAAAGAATGTCTAAGCATATCACAATCTACAAGTTTGCAATTGAAATCAGAACCCTTGGAAAATCCACAACATATAGGGCATCCACTTTTCGaaacattttcaaatcaggACGATCAAACAACTGACACTGGCATTGGAAAGCACTGTTCGGAATGCAAACAAGAGTTTTCCAGTTATTCGCTCTTTGCTGAACATATGCGGACTCATAAAGTTGAAAGACCTTTTATTTGTCCAACTTGTGgcaaaggttttaaaaaaaatgcacatgtTAAGTCTCACATAATGATAGTTCATAAAAGAATACTGCCATACAAATGTATTGAATGTTCTCGGTCCTTTTCAAGCAAGTATAATCTACAAATGCATTTGAAAACTCACATTGCAAAAGGAAATCTGAAAAAAGGAAGTTCTAAACGACGAGTTGTtgtcaaaaaaagttattacaAAGATCCACCTTATCATGCAAAACCAATTTATACTGAAAGTGCACTTAAAACTACATCAAGAGAGAGCCAGCAATGTGAAATTAAAGAGGAtacaataatttacaaaattcaaaatcaaatgaAACAACCTGAAATACAATTGCCTTATGGTAGAAATGAGAACAAAATAAGGTGTACATTGTGCTTTGTCTCAATACATACagaaaatttatcaaaacacaTGCAAGAATATCACAATTTACCCGAATCTATAACGTGCATACCAATTAAGAAGGAGCCTATAGAGGAACCAGAACAATTGGGACATCGACGACGAATAGAAACTGAGTTAAGTCAGACTGAAATATCGAACATCGCTCCACCTCGCCGTCTACAATGCCCAACATGCGATAaagaaTTTTATCATCTATCGCGGCTTAATGAACACATGCGAGCCCATAGTGATGAAAGACCATTCATCTGCTTGGTTTGTGGTAAGACCTTCAAACGGCATGGTCATCTTACGACCCACATAGCCATATGTCACAAAAAAGCAAAACCATTTAAATGCAAGGAGTGTCATGAAACGTTTTTAAGTAACTTGGACTTAGATGTTCATTTACAAACACATATTACCAAACAGCTTCCTGCGGGTTTTCTTGTTGACACCAATTTACAAAACGAAACCAACTTAGAGCCACCTCAGAATGATGAGCCTCTCCCTCCGTGTAGTATAGGTGCTGAACTTACGGGAGAATACACAACTGAAGAGACACATCAGTGTACCTTTTGTCCTACAGTATTTAAATCCATTTCACATCTCATGGAACACATGAAGGTCCACACCAGTGATCAACCTTTTATTTGTTCTCTTTGCGGCAAGGGTTTCAGTAGCAATGATGACCTCTCCATCCATCGTTCAGTTAGGcacaataaatcaaaacctTATCAATGTAACCAGTGCGTACGGAAATTTAGAACAAGCTTAGAACTAAAAAAACATCTATTGATTCATGCTAGTAACAGTCAACGGATGCAAAAACAAATTCgtcgtaaaaaacaaattaacaaacAGAACCTGGATCAAAACAATCAAGAATCATTAAGCTATTTGAAAGACGTACCTCACTGTCGTATTTGTAaaaaagaaTTTTCTAACAATTGGGTCCTAAAAGAACACATGAAATGCCACTCCTCCGACAGACCATTCATCTGTCCAATTTGTGGACatggtttttctaaaaaatataatctcaaaattcatttaatggcgcataaaaaaattaagcccTTCAAGTGTCATTTCTGTCCGCAATCGTATTGCACAAACTCAGGACTGACTCATCATATGCGGACACATACTCATGGACGCAAGCGAATAGACATTGATTCATTCAGCtctgaaaatttaaaactctaA
- Protein Sequence
- MRAHEKTHFNERRKKFKSKSKSSDKSRQTHEKHSTVETSKETEQNAQNDLQDQVIQDFEKLELHPLFGSMSSNQDENTNKEQNSFFPCPQCEKTFVLHSDLIDHMETHSTSARPFNCSICYKTFKQEAHLKNHTQMSHTKTRNYKCSECDRVFLTFYILNKHMRSHKGKKNRSKAKSKRGYKKRVNYLKHLQQTEYSEQLCTSIAQDETNEPTVGDDAVSETVNNSKEKPQPETAIRRNNIQITCALCSVAVDADNLTEHMKECLSISQSTSLQLKSEPLENPQHIGHPLFETFSNQDDQTTDTGIGKHCSECKQEFSSYSLFAEHMRTHKVERPFICPTCGKGFKKNAHVKSHIMIVHKRILPYKCIECSRSFSSKYNLQMHLKTHIAKGNLKKGSSKRRVVVKKSYYKDPPYHAKPIYTESALKTTSRESQQCEIKEDTIIYKIQNQMKQPEIQLPYGRNENKIRCTLCFVSIHTENLSKHMQEYHNLPESITCIPIKKEPIEEPEQLGHRRRIETELSQTEISNIAPPRRLQCPTCDKEFYHLSRLNEHMRAHSDERPFICLVCGKTFKRHGHLTTHIAICHKKAKPFKCKECHETFLSNLDLDVHLQTHITKQLPAGFLVDTNLQNETNLEPPQNDEPLPPCSIGAELTGEYTTEETHQCTFCPTVFKSISHLMEHMKVHTSDQPFICSLCGKGFSSNDDLSIHRSVRHNKSKPYQCNQCVRKFRTSLELKKHLLIHASNSQRMQKQIRRKKQINKQNLDQNNQESLSYLKDVPHCRICKKEFSNNWVLKEHMKCHSSDRPFICPICGHGFSKKYNLKIHLMAHKKIKPFKCHFCPQSYCTNSGLTHHMRTHTHGRKRIDIDSFSSENLKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -