Basic Information

Gene Symbol
-
Assembly
GCA_951394125.1
Location
OX596030.1:82558467-82569846[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.027 2.5 9.3 0.4 1 23 314 336 314 336 0.98
2 29 3e-05 0.0028 18.5 4.0 1 23 342 364 342 364 0.98
3 29 0.0025 0.23 12.5 1.3 1 23 370 393 370 393 0.91
4 29 0.00037 0.035 15.1 0.4 3 23 399 419 398 419 0.97
5 29 0.11 11 7.3 1.2 1 23 427 450 427 450 0.91
6 29 0.0011 0.11 13.6 0.4 3 23 459 480 457 480 0.94
7 29 0.016 1.5 10.0 0.3 1 16 486 501 486 502 0.87
8 29 0.0025 0.23 12.5 0.4 1 23 777 799 777 799 0.99
9 29 0.048 4.4 8.5 2.8 1 23 805 827 805 827 0.93
10 29 0.018 1.7 9.8 4.4 1 23 833 856 833 857 0.94
11 29 0.001 0.097 13.7 0.3 3 23 862 882 861 882 0.97
12 29 0.13 12 7.1 0.7 1 23 890 913 890 913 0.91
13 29 0.0034 0.31 12.1 0.3 3 23 922 943 920 943 0.94
14 29 0.056 5.2 8.2 0.4 1 12 949 960 949 961 0.92
15 29 0.28 26 6.0 0.2 6 23 1225 1242 1225 1242 0.98
16 29 0.00016 0.015 16.2 0.4 1 23 1248 1270 1248 1270 0.98
17 29 2.4e-06 0.00023 22.0 3.0 1 23 1276 1298 1276 1298 0.99
18 29 0.0019 0.18 12.8 1.2 1 22 1304 1325 1304 1327 0.90
19 29 0.0014 0.13 13.3 0.4 3 23 1335 1355 1334 1355 0.97
20 29 0.00023 0.021 15.8 0.2 2 23 1364 1386 1363 1386 0.96
21 29 0.02 1.8 9.7 0.5 1 23 1393 1416 1393 1416 0.92
22 29 0.025 2.3 9.4 0.2 1 16 1422 1437 1422 1438 0.87
23 29 0.093 8.7 7.5 1.5 1 23 1605 1627 1605 1627 0.97
24 29 0.00013 0.012 16.6 1.1 1 23 1633 1656 1633 1656 0.93
25 29 0.00032 0.03 15.3 1.6 1 23 1662 1685 1662 1685 0.93
26 29 0.0009 0.083 13.9 2.0 3 23 1693 1713 1692 1713 0.97
27 29 0.0026 0.24 12.4 4.0 1 23 1721 1744 1721 1744 0.97
28 29 0.025 2.3 9.3 0.3 1 23 1751 1774 1751 1774 0.92
29 29 0.044 4.1 8.6 0.3 1 17 1780 1796 1780 1797 0.89

Sequence Information

Coding Sequence
ATGAAGTGCattctttgtttaaaaacacCGGACAAACCAATTGATATATTCGGAGAGCAAGGTCGTAGTCTCGATATGAAATGTAtaatttctaaacatttttggcTCGAGCCAAATCAAGAGGATATTAACTCCAAATTAATATGTTCATCATGTTGGATATCAGTTGATGCATTTCACAAATTTTACGAAGAAATAAAAGAAGCCCATTGTTCGTTTCAAGAAATAAAACCTGCAGTTGCAGAAGATGATTTTCAAGAAGGAGGAACCATGTCAAACGACAATCATTTCAGTGACAATAATATGTATTTGGATGAAGATATTAAAGTTGAAGATTAcgaatcaacaaattttcaaatggaATTACAATGTCATATAAATCCTTTAGAAATATCAATCAAAAGTGATGAAAGGGATTTTGACATTAAATCCGACTCAGAGTCTGAAATGCCTTTATCCGAATTATCCAGACAGCTTCATAAAAAGGTTAAAACTGTGAAGAAGGTCAATATTGCCGGAGTCGAACAGttcaaaaaaagagataaaactTCTAAGACAAACATCGGAGCGCCCAAAAAGAAACTACTTAAGGATAGAACTCCaaagaaaacaaacgaaaaatcaaaaatgagtTCCCCTATTAAAGACACCATTGAAGAAAAACTTCATATCCACGAAGGCAAATGGCTAGCCAATTGCTATGCAGAAGAAACTTATTCCAGGCCAATAAGCTCTGAAGAGCTGGACAAATACTTAAAACAGAACATAGAACTTTTGTGTGGTGTTTGCCAGAAGCCAATGGATGAATTCGCATCCCTCCATCCGCATTTCGTTAAGTATCATGATAAAGCTAAACCTTTTGTATCTTGTTGTGGGAGGAAACTTAAGTACCGTGCGCATATAATCGATCATAGTTTAGTGCATAAAATCCCGGACTATTTTAAGTGTATGGAATGCTCAAAAGTTTGGCCATCTCGTCGCAGTCTGAAGGAGCACTTGTCAATACATAATAAGAATTTCATTTACCACTGTGACAAATGCAACAAGAGCTTTTGCAGTAAGCCTGCTCTTGAACGTCACCAGGAGGTTCACTTTGTGGAACGTCCATTTAAATGTGACGAGTGTGATAAGTTCTACGCAACAGAATACCGACTTAAGCAACACGCCTACAACATgcatcaatataaaaaaatttgtgaacaaTGCGGGCAAGTATTTCGAGAGAAGGAAACATTTGTTCGACATTTATTGAAACACACAAATCAACCAAAGCCATTTTTTGAATGTAAAATATGTGGAGCTAGGCTTTCGAGTAAAAAAATTCTACAGAAACATAACAAGTTTCAGCATTTGGAAGATTCAATCGAACAAAATTGTAACCTATGTGGAATTACAGTTAAAAACTTGCAAGCTCTCAAACGACATATGAATTTCGTTCATAAATATCAGCGGGAGCACAAGTGTACAATGTGCGACAAAGCCTTCAAGAGGGCTCTTACACTTaagCCAAATCAAGACGATGGCAACTCCACATTGATATGTTCTTCATGTTGGACATCAGTTGATGCatttcacaaattttaccaaaaaataaaagaagcccATTGTTCGTTTCAAGAAATAAAACCTGCAGTTGTAgatgattttcaaaaagaagtAACTATGTCCAAAGATAATCGTTTGAATCACAATAACTTGTATATGGATGAAGatataaaaGTTGAAGCCTACGAATCAACAAATTTCCCTATAGAATTACAATGTCATATAAATCCTTTGGAAATGTCAGTCAGAATCGATGAAAAGGACGTTGAGATTAAGTCGGACTCGGAGTCCGAAATGTCTTTATCTGAATTATCCAGACAACttcaaaaaaaggataaaatctTAAACAAGAGCAATATTACAGAAGTCAAACAATTccaaaaaagaagtagatctaaGAGTAACATTGGAGAGCccaaaaagaaattacttaagGAAAAAACTCCAAAGAAAACACATACAGAATCCAAATTGAGTTCCGAGAGTATAGATAACAATGATGAAAAACTTCATATACACGAAGGCAAATGGCTAGCCAAGTCATATGCAGAAGAAACTTATTCCAGGCCAATAAGCTCTGAGGAGCTGGACAAATACATAAAACAGAACATAGAACTTTCGTGTGGAGTTTGTCAGAAGCCAATAGATGAATTCGCATCCCTTCATCCGCATTTCGTTAACTGCCATGAAAAAACTAAACCATATGTCTCTTGTTGTGGGAAGAAACTAAAGTTTCGTGCTCATATAATCGATCATAATTTAGTGCACAAAATACCTGAATATTTTAAGTGTGTGGAATGCTCAAAAGTTTGGCCATCTCGTCGGAATTTGAAGGTACACTTGTCAACACacaataagaattttatttaccaCTGTGAAAAATGCAACAAGAGCTTTGGTAGTAAGCCTGCTCTTGAATTTCACCATGAAGTACACTTTGTAGATCGACCATTTAAATGTGAAGAATGCGATAAGTTCTATGCAACAGACTACCGACTTAAGCAACATATCTACCATGTGCAtcattataagaaaatttgtgAACAATGCGGTCAAGTATTTCGGGAGAAGGAAACATTTGTTCAACATTTATTGAAACACACAAATCAACCAAAGCCAATTTTTGAATGCGAAATATGTGGAGCTAGGCTTTCGAGTAAAAAAATTCTACAGAAACATAACAAGTTTCAGCACCTGGAAGATCCAATAGAACAAAATTGCGACCTTTGTGGAATTAAAGTTAAGAACTTGCAAGCTCTTAAACGACatatgaattttgttcataaatatCAGCGGGAGCACAAGTGTACAATGTGCGACAAAGCCTTCAAAAGGGCTCTTATACTTAAGtgcattttgtgtttgaaaaatcCACATGTGTCAATAAATATATTCGGAGAGACTGGTCGTTACCTCGATATCAAAGAAATCATAACTAAACACTTTTGGCTTCAGccAAATGAAGACAATAGGAGTTCGAATTCGATATGTTCTATTTGTTGGACAACATTGGAATCATTTCACAAATTCTATGAAGAAATCAAAAAAGCCCACTGTTCGCAAATGGAAATTAAACCTGCAAATGATGAAAATGAGGACTTGGAAGTAGAAGTCAATGCAAGTGATTATCATGTAGATAATTATGACGGTATCCTGTGTCAAGccATTAAAGTTGAATTGAAAGAGGAAACTAATAATGAAAGAACGGAACACGATAACTCTAAcgaaaatgtaaaatgttcAATAGAAGTGGAAGTAAAATATGACCAAGATGAACCTGATAGAGACGAATATTTGGAGGAGTCCGACTCGGAAATCCCCCTCTCTAAATTGGCCAAACAAGGTCAGGAAGAAAAGGAAAGCCCTAAAAGTAATTCTAGCTTCAAATCAGACGTCCAAAGTAAAAATACCGATGACCAAAAGGTTCACATCCAAGACGGAAAATGGCTTGCAACTTGCTTTGGTGAGGAAACCACCGATAAGTCCATTAGTCACAAAGAGTTGGATAAgtttatcaaaattaacattGAACTTACCTGCGAAATATGTCGAATACCAATGAAAGACTTCTTAGCACTCCAAAAACACTTCAAAGATACCCACACTGGAAAAACCTTTGTGACTTGTTGCGATAAAAAGTTCTCACTGCGAAGTCGTTTAGTTGATCATATTTTGCTACATAAGCTACCTGGCTATTTTACATGTGTGATCTGCTCTAAGCTCTTGTCTTCTCGAGAAAACCTAAGAAAACATATGATTGTGCATGACAAGAAATATGACTTCCAATGTAATAAGTGTGATAAGACTTTTTATCGGAAACAACTTCTTGACCGTCACATGGATACCCACGTACTAGatcgaaaatttaaatgtgACAAATGTGACAAACTcTTTACATCGAAATTTTCTCTAGGACAACACGTCTACGGTGTCCATAAAGGTGGCTATAAGAAAATTTGCGAGCAATGTGGCAAAGTTTCTCGTGACCATGAAGCTTTCGTTCGTCATCAATTGGTACACACAAATCAACCAAAACCATTTGTCGAATGCCCAAAATGTGGTATCAAACTCGTTGACAAAAATGGGTTACGTAAACATATGCAATCTCAGCATCCCGATGAAACACGTGAACACGTTTGCACCGAATGCGGAATCATAACTAACACAATATTTGCATTGAGGCGACACATAACGTTTATGCACAAGAGAAAACGTGACCATAAGTGTCCGGTGTGTGAAAAAGCTTTTAAGAGAGCTCTTACTTTGAAGCCATTGGATGTTGATTCCGTCGACGAAAATATTAAATGCCCTTtagaatttaaagtaaaatgcgatcaaaataaatttgacatgGACGAAGAGGAACAAGAGGAATCTGATTCGGAAATTCCCCTATCAAAGTTGAGCGAACAACTGCAACATAAGGAGGAAAGTTTAGAAAGCAATTGTAGTACTAAGTCGAATGACAAAGGTAAAAACACTAAGGATGAAAAGATACACATCCACGAAGGTAAATGGCTGGCCACTTGTTTTGGCGAAGAAACTGTTATAAAGCCTATAAGTCACCATGAGTTggacaaatttattaaattaaatacggaACTAACTTGTGAGATATGCCGCATTCCAATGAAAGATTTCTTAACCCTTCAGACGCACTTCAAAGATACCCATACTGTTAAACCCTTTGTAACTTGTTGTGACAAAAAATTCGAACTTCGTTGTCGTTTAGTTGACCACATTTTATTGCACAAGTTGCCCAATTATTTTACATGTGTTGTATGTTCCAAAGTCTTGTCGTGCCGccttaatttaagaaaacacaTGGTTGTTCACGATAAAAAACAAGCTTTCCAATGTGACCAATGCGATAAGACCTTCTACCGAAAAGAGGTCTTTAATCGTCACGTGTTGGATATACATACTTTAGatcgaaaatttaaatgtgAAGAATGTGATAAACTatTTGCTTCAAAATGTTCACTAAACACGCATATCTACGGTGTTCATAAAGGTCGATATAAGAAAATTTGCGAGCAATGCGGTAAGGTCTCTTGTGATCAAGAAACTTTTCTTCGTCACCAAATGAAACATTCAAACAAACCACAAACATATTTTGAATGTCCAAAATGTAGTGTCAAACTTTCAACCAAACACGGATTACGACATCATATTAGATATCAGCATTCAGAAGATACCCGAGAACACGTTTGCAATGTTTGTGGAAACATATCAACAAGTGAAGCGGCATTGAAACGGCATGTAACATATATGCACAAGTACAAACGAGATTTTAAATGCTCGTTGTGTGAAAAGGCTTTTAAGAGGGCTCTTACTTTGAAGGTAAGAAGAtag
Protein Sequence
MKCILCLKTPDKPIDIFGEQGRSLDMKCIISKHFWLEPNQEDINSKLICSSCWISVDAFHKFYEEIKEAHCSFQEIKPAVAEDDFQEGGTMSNDNHFSDNNMYLDEDIKVEDYESTNFQMELQCHINPLEISIKSDERDFDIKSDSESEMPLSELSRQLHKKVKTVKKVNIAGVEQFKKRDKTSKTNIGAPKKKLLKDRTPKKTNEKSKMSSPIKDTIEEKLHIHEGKWLANCYAEETYSRPISSEELDKYLKQNIELLCGVCQKPMDEFASLHPHFVKYHDKAKPFVSCCGRKLKYRAHIIDHSLVHKIPDYFKCMECSKVWPSRRSLKEHLSIHNKNFIYHCDKCNKSFCSKPALERHQEVHFVERPFKCDECDKFYATEYRLKQHAYNMHQYKKICEQCGQVFREKETFVRHLLKHTNQPKPFFECKICGARLSSKKILQKHNKFQHLEDSIEQNCNLCGITVKNLQALKRHMNFVHKYQREHKCTMCDKAFKRALTLKPNQDDGNSTLICSSCWTSVDAFHKFYQKIKEAHCSFQEIKPAVVDDFQKEVTMSKDNRLNHNNLYMDEDIKVEAYESTNFPIELQCHINPLEMSVRIDEKDVEIKSDSESEMSLSELSRQLQKKDKILNKSNITEVKQFQKRSRSKSNIGEPKKKLLKEKTPKKTHTESKLSSESIDNNDEKLHIHEGKWLAKSYAEETYSRPISSEELDKYIKQNIELSCGVCQKPIDEFASLHPHFVNCHEKTKPYVSCCGKKLKFRAHIIDHNLVHKIPEYFKCVECSKVWPSRRNLKVHLSTHNKNFIYHCEKCNKSFGSKPALEFHHEVHFVDRPFKCEECDKFYATDYRLKQHIYHVHHYKKICEQCGQVFREKETFVQHLLKHTNQPKPIFECEICGARLSSKKILQKHNKFQHLEDPIEQNCDLCGIKVKNLQALKRHMNFVHKYQREHKCTMCDKAFKRALILKCILCLKNPHVSINIFGETGRYLDIKEIITKHFWLQPNEDNRSSNSICSICWTTLESFHKFYEEIKKAHCSQMEIKPANDENEDLEVEVNASDYHVDNYDGILCQAIKVELKEETNNERTEHDNSNENVKCSIEVEVKYDQDEPDRDEYLEESDSEIPLSKLAKQGQEEKESPKSNSSFKSDVQSKNTDDQKVHIQDGKWLATCFGEETTDKSISHKELDKFIKINIELTCEICRIPMKDFLALQKHFKDTHTGKTFVTCCDKKFSLRSRLVDHILLHKLPGYFTCVICSKLLSSRENLRKHMIVHDKKYDFQCNKCDKTFYRKQLLDRHMDTHVLDRKFKCDKCDKLFTSKFSLGQHVYGVHKGGYKKICEQCGKVSRDHEAFVRHQLVHTNQPKPFVECPKCGIKLVDKNGLRKHMQSQHPDETREHVCTECGIITNTIFALRRHITFMHKRKRDHKCPVCEKAFKRALTLKPLDVDSVDENIKCPLEFKVKCDQNKFDMDEEEQEESDSEIPLSKLSEQLQHKEESLESNCSTKSNDKGKNTKDEKIHIHEGKWLATCFGEETVIKPISHHELDKFIKLNTELTCEICRIPMKDFLTLQTHFKDTHTVKPFVTCCDKKFELRCRLVDHILLHKLPNYFTCVVCSKVLSCRLNLRKHMVVHDKKQAFQCDQCDKTFYRKEVFNRHVLDIHTLDRKFKCEECDKLFASKCSLNTHIYGVHKGRYKKICEQCGKVSCDQETFLRHQMKHSNKPQTYFECPKCSVKLSTKHGLRHHIRYQHSEDTREHVCNVCGNISTSEAALKRHVTYMHKYKRDFKCSLCEKAFKRALTLKVRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-