Eeli012335.1
Basic Information
- Insect
- Epistrophe eligans
- Gene Symbol
- -
- Assembly
- GCA_951394125.1
- Location
- OX596029.1:97941083-97951708[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.02 1.8 9.7 0.1 2 23 149 169 148 169 0.96 2 23 0.066 6.2 8.0 1.9 2 23 303 323 302 323 0.97 3 23 0.0018 0.17 12.9 1.3 1 23 329 352 329 352 0.95 4 23 1.2 1.1e+02 4.0 0.1 2 23 359 380 358 380 0.88 5 23 2.9 2.7e+02 2.8 6.1 2 23 385 406 384 406 0.97 6 23 0.00083 0.077 14.0 0.5 1 23 412 434 412 434 0.95 7 23 2e-06 0.00018 22.3 1.5 3 23 446 466 445 466 0.97 8 23 3.9e-06 0.00036 21.3 2.3 2 23 474 495 473 495 0.97 9 23 0.00013 0.012 16.5 0.3 2 23 501 522 500 522 0.97 10 23 0.00067 0.063 14.3 3.6 1 20 528 547 528 550 0.94 11 23 0.0015 0.14 13.2 0.6 2 23 556 577 555 577 0.91 12 23 4.9e-06 0.00046 21.0 0.3 1 23 582 605 582 605 0.98 13 23 0.1 9.6 7.4 0.6 1 23 663 685 663 685 0.94 14 23 5e-05 0.0046 17.8 1.1 1 23 692 714 692 714 0.98 15 23 0.0015 0.14 13.2 0.4 1 23 719 741 719 741 0.98 16 23 3.9e-06 0.00036 21.3 1.3 1 23 747 769 747 769 0.99 17 23 2e-05 0.0019 19.1 0.8 2 23 775 796 774 796 0.98 18 23 6.4e-06 0.0006 20.6 0.2 1 23 805 827 805 827 0.98 19 23 0.0035 0.32 12.0 0.5 1 23 834 856 834 856 0.97 20 23 5.1e-05 0.0048 17.8 3.5 1 23 861 883 861 883 0.98 21 23 5.2 4.8e+02 2.1 0.5 1 8 889 896 889 897 0.90 22 23 0.039 3.6 8.7 2.3 2 23 899 920 898 920 0.94 23 23 0.00021 0.019 15.9 2.0 1 23 925 948 925 948 0.96
Sequence Information
- Coding Sequence
- atgttTGACTCGCTGCCTATATGTCGTGTGTGTTTAAAAACATCACTTGAATATATTGATTTTGATACACCATTTGAGGTGGACGCCAGCATAAAAGCAATGGACAACGATCTTACGTATCTTGATTGTTTTCAAGCTTGTACTCGTATTGAAATTGAATTCGATGAAAATTGCCCACAAAGTTTATGCAGTTCATGTGGTCTTGAACTAAAAATTGCTTATGAATTCATTCAAAAAGCCGAGTCTGCAGATAAGAAGCTACGTCAATTATCTGCAAGtacaaaagttgaaaaattcgaCGATGAAGAAatgaaATGTTTCCTTCAACCTgaattgatatctttaaatgATAATTTAGCAAATGAGGATAATCGAAAGCAACGCCCGAAACTGCTAGAAAACCAATTGGATGATGAAGATCAAAGCAATGCAGTAGATAAAGTTGAATGTCAAATTTGCGAAATGGCCTTGTCTTTAGATAATTTAAACAGCCATATGCAAATGCATGAAGAAGAATCCAGCTTTCAAGACAATGACAATGAAAATCAAGATGATGAGGAAGTAGTTATGGAGGAACCCGAAGATGTCGAATTTGAAATGCTTGATATGACAAATGTTTCTGCAGATGAAGAAGATGTAAGAATTAATGTAAACGACTCTCAAGATTTAAATGACTCGCAAGATGTAAATGACCTTCAAGATGTAAATGACTCCCAAGATATAAACGATTCCCAAGATGTAAATGATTCTCAAGATGCAACTGCCTCCGAAGGCTATGAACCAGTTGACCAAGACGAAGAGGAGATGCTTtcgcaaattaaaaatgaaacagaTACAGAATTCCATGTGATAGCAAAAATGATAACCGAACAAGAAAAACACCTAGTTAGAAAGGAGAAACACAAACAATGTGAGATTTGCAAGAAGCATGTGCGAATAACTTCGTTTACTGCACACATGAACGTTCATAATGGTATTCGTCAATTTCCATGCGAATACTGTTTTCAGGCTTACTTTTCAAAACGTTCATTGCAAAAACACGTTAAGGCTAACCATTCTGACATTCTGGAGTCTCGTTGTAAAATATGTAACGAAACGGTTGAAGCTGCCGATATGAAGGCTCACATAGAAGAAAGACATTCGCATGTAGTGAAGTGCACGCAGTGTGATCATGAATGCCAAGAGTCTAAAATGAAAGACCACATGAAGCGGAAACATTCAGAATCCAAAGACTATTTATGCAATGTTTGCTCCAAAACATTCAGTACGCTTGGCATACTCAATGCCCATTTGAAATATCACGAAAAAAAAGATGTCAATGCCAGATCGGAGGCATGTGATATATGTAGCAAAGTATTCTCTTCGAATCACTATCTAAAAAAGCATATGCTTATACATCAGGAGCAACGTAAACTATTAGAATGTACTTATTGTGATAAGAGCTATCATTCAAAAAATTCCTTAGAAAATCATATGCGAATTCATACGGGTGACACAATCAAATGCGTTATGTGTGCAAAAGAATTCGGGCGGCAATACGAATTGAATGTTCACATGCGATTTCACACAAAAGAATATCCATTCCAATGTGAGCTGTGTCACAAAAAATTTGCTATTAAGGGTCATCTGAGAACGCATATGTGGCGTCATCAAGGTCTCAAGTTGCAGTGTGAAGAATGTGGAAAACTTTTTACATCCACCAAAGCGTTGCAAGAGCATTCTTTCTATCATTCTGAGATGCCTTACCAATGTCCGTACTGCCCAAAAGCCTATCCTTCGAAACCGAAATTCAAAGTTCATTTGAAAACTGCTCACATGGTGGAATTCTCGAATgatgaattacaaaaaatggGCAAATTTACTCTACCAAAAAGACCTAGATCCAGAAAGTTTACCTTAGTTCAGGCTGATACTGTTATTAAAGAAGTTGAAGACCACTTGAAAAATCACGATAAAGAGGGTCCAGATGATGGTCAAAATAAGTCCTTCGCTTGTGACATTTGCGGAAAAATTTCCCCTTCGCGCCAATGTGCAAAGATTCACAGATATATACATGATGAATCTCGTCCCACATTTAAATGTAATGATTGTGGCAAGATATACCTTACATCGTCATCGCTAAGCCAACATCGAAGATGGCATACAGGAAAGGCCTTTAAGTGTGTCCAATGTCCAAAGATGTTCATACTTGAAGCTGAATATAAAATTCATCTGCGATTTCATACACACGATTATCCATATCAATGCGAAATGTGTGGCAAGAATTTTAATGTCAAGGGTCATTTAAATGGTCACCTAAAAATGCATTTAGGTTGGAAgattaaatgcaaagaatgtgCTAAAACTTTCGCTCGTATATATACACTAAAGGTCCATTTGAAAACTCACGAAAAAGTGGACAAAATTGAGTCCTATCCTTGTGAGATTTGCGGCAAAAGTTTTTCTTCGCGCCCAACAGCAAAGGCCCATAGAAAAGTACATGATGAATCTCGTCCCACATATCCATGTGTTGATTGTGGCAAGATATACCTTTCAAAAGAATGGTTACGCTACCATAGAAGATTCCATACAGGAAAGGCATTTAAATGTGTCCAATGTCCAAAGATGTTTATTCACAAATCtgattataaaattcatttgcGATTTCACACACGCGATTATCCATATCAATGCGAAATGTGTGGTTGGAAGATTAAATGCAAAGTTTGTGGAAAACTCTTTTCTACTCGACAAGCACACAACGATCATATTTTCAAACACAGTGAAATGCCTTTTAAATGTCTACATTGTACAAAAGGTTACCCTAGGAAAGCGAAactaaGGGCTCATCTTAAAGCAACTCATTCGATGGATATGACTATGGAcgagataaataaaatatatgttaaaGAGCCAACAGTTGCAAAGAGACAGAAAGTAGAATGGATCAAAGTTGATTCTAATGAAATGGATGAAGATGTTTCAGTTGATTTAAGCCAACAATAG
- Protein Sequence
- MFDSLPICRVCLKTSLEYIDFDTPFEVDASIKAMDNDLTYLDCFQACTRIEIEFDENCPQSLCSSCGLELKIAYEFIQKAESADKKLRQLSASTKVEKFDDEEMKCFLQPELISLNDNLANEDNRKQRPKLLENQLDDEDQSNAVDKVECQICEMALSLDNLNSHMQMHEEESSFQDNDNENQDDEEVVMEEPEDVEFEMLDMTNVSADEEDVRINVNDSQDLNDSQDVNDLQDVNDSQDINDSQDVNDSQDATASEGYEPVDQDEEEMLSQIKNETDTEFHVIAKMITEQEKHLVRKEKHKQCEICKKHVRITSFTAHMNVHNGIRQFPCEYCFQAYFSKRSLQKHVKANHSDILESRCKICNETVEAADMKAHIEERHSHVVKCTQCDHECQESKMKDHMKRKHSESKDYLCNVCSKTFSTLGILNAHLKYHEKKDVNARSEACDICSKVFSSNHYLKKHMLIHQEQRKLLECTYCDKSYHSKNSLENHMRIHTGDTIKCVMCAKEFGRQYELNVHMRFHTKEYPFQCELCHKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFYHSEMPYQCPYCPKAYPSKPKFKVHLKTAHMVEFSNDELQKMGKFTLPKRPRSRKFTLVQADTVIKEVEDHLKNHDKEGPDDGQNKSFACDICGKISPSRQCAKIHRYIHDESRPTFKCNDCGKIYLTSSSLSQHRRWHTGKAFKCVQCPKMFILEAEYKIHLRFHTHDYPYQCEMCGKNFNVKGHLNGHLKMHLGWKIKCKECAKTFARIYTLKVHLKTHEKVDKIESYPCEICGKSFSSRPTAKAHRKVHDESRPTYPCVDCGKIYLSKEWLRYHRRFHTGKAFKCVQCPKMFIHKSDYKIHLRFHTRDYPYQCEMCGWKIKCKVCGKLFSTRQAHNDHIFKHSEMPFKCLHCTKGYPRKAKLRAHLKATHSMDMTMDEINKIYVKEPTVAKRQKVEWIKVDSNEMDEDVSVDLSQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -