Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.3 2.1e+03 -0.6 0.1 16 24 2 10 1 17 0.80

2 9 8.2 1.3e+04 -3.2 4.1 14 26 52 64 34 67 0.84

3 9 0.001 1.7 9.3 0.3 16 41 141 163 135 165 0.83

4 9 0.37 6.1e+02 1.1 2.0 16 24 167 175 163 178 0.85

5 9 7.6e-07 0.0012 19.3 0.9 14 40 193 216 185 218 0.86

6 9 0.031 51 4.5 2.3 1 29 209 236 209 242 0.84

7 9 6e-06 0.0098 16.4 2.1 3 41 239 274 237 276 0.91

8 9 0.017 27 5.4 2.1 12 41 277 303 274 306 0.79

9 9 0.01 17 6.1 0.1 18 29 326 337 319 348 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.3	2.1e+03	-0.6	0.1	16	24	2	10	1	17	0.80
2	9	8.2	1.3e+04	-3.2	4.1	14	26	52	64	34	67	0.84
3	9	0.001	1.7	9.3	0.3	16	41	141	163	135	165	0.83
4	9	0.37	6.1e+02	1.1	2.0	16	24	167	175	163	178	0.85
5	9	7.6e-07	0.0012	19.3	0.9	14	40	193	216	185	218	0.86
6	9	0.031	51	4.5	2.3	1	29	209	236	209	242	0.84
7	9	6e-06	0.0098	16.4	2.1	3	41	239	274	237	276	0.91
8	9	0.017	27	5.4	2.1	12	41	277	303	274	306	0.79
9	9	0.01	17	6.1	0.1	18	29	326	337	319	348	0.75

Coding Sequence: ATGAAAACGAAGTGTATTCTCTGTCGCCATCGAATTGACCCTAACTTGGGTTATTACAACATAGGCGACACCAGCATTGAATTCTccaagaaaacaattaaaaacattcTCATTCATCTATCCAAATGTATCaaaacagatttttgttttgaagataACTCTTGTGTTTGTAATTCCTGTTATGAAAAACTAGTTGAATATGATCAAATAATGATTAAGCTACTGAATTGCCAAAAGGAATTATCACAAATGCTAAAAGATTCTATTAAACCTATTGATAGCGACAACGATACTGATGAAGGTAATAATATTAAAGATGAAGAGTCTTGCAGTAATTTTTCCCTTAGTAATGATGTTGAGAGCATGAATGATTCGAATCAAGAATTCACAGAGAATTCCATCTTTGACGATCCACCCCGTTCTTTTGAATGCAGTATTTGTGACAAAAGCTTGAGCACTAAAACCTCCCTTAAAAATCATCTAGAAACTCATACTTTGGcagttaaatgtaaaatttgtggTGCACTATGCAAGGATGAGGAATACCTTGAATTACACATGAACATTCATGAAGGAAAAACAGAGAACCAGTGTCGATATTGCCCTAAACAATATTCACGCCGTTCTAATGTAATTCGTCACATGCAATTTCATTGGgataaaaagaaattgcaaTGTGAAAAATGCGGCCTCCGGTTCTCACAAACACACTTACTTTATAACCACAAAATGATCCACGAAGCTGAAGAACAACCTATAATATGCAAAATTTGTGAACAAAcctttaaatcgaaaaaaacgtTCAGACATCATATGGTAACCCATCAAGAAGATCGGCCAATGCATACCTGTGAAATTTGTAGCAAGAAATTTACCGAAAGATACACTTTAAAGATGCACTTAAAAACACACAGTAATTTTAAGGAAGAAGAATCAGAAACACCAAAGAAAGGAAATGCTCCAACAAAAAGATTCCCCTGCATTATATGCGAAAAAGTTTTGAGCACAATGGAGAGTCTTGAAAACCATAGGGCTAAAGAACATGATGTTATTTGTTCCGAAAGtattttcgtaaaattttaa
Protein Sequence: MKTKCILCRHRIDPNLGYYNIGDTSIEFSKKTIKNILIHLSKCIKTDFCFEDNSCVCNSCYEKLVEYDQIMIKLLNCQKELSQMLKDSIKPIDSDNDTDEGNNIKDEESCSNFSLSNDVESMNDSNQEFTENSIFDDPPRSFECSICDKSLSTKTSLKNHLETHTLAVKCKICGALCKDEEYLELHMNIHEGKTENQCRYCPKQYSRRSNVIRHMQFHWDKKKLQCEKCGLRFSQTHLLYNHKMIHEAEEQPIICKICEQTFKSKKTFRHHMVTHQEDRPMHTCEICSKKFTERYTLKMHLKTHSNFKEEESETPKKGNAPTKRFPCIICEKVLSTMESLENHRAKEHDVICSESIFVKF

Sequence clustering based on sequence similarity using MMseqs2