Echr024222.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595860.1:273294-275990[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.56 38 5.8 0.1 2 23 54 76 53 76 0.94 2 12 0.36 25 6.3 0.7 3 23 83 103 82 103 0.95 3 12 2.9 1.9e+02 3.5 1.1 1 23 111 134 111 134 0.92 4 12 4.6 3.1e+02 2.9 0.1 2 21 170 189 169 190 0.92 5 12 0.9 61 5.1 0.4 1 21 196 216 196 217 0.95 6 12 0.17 12 7.3 0.3 2 21 233 251 232 252 0.93 7 12 0.76 52 5.3 1.1 2 23 257 279 253 279 0.89 8 12 0.85 57 5.2 2.1 2 23 287 309 286 309 0.96 9 12 0.053 3.6 9.0 3.4 1 23 318 341 318 341 0.96 10 12 0.00021 0.014 16.5 2.2 1 23 347 370 347 370 0.96 11 12 0.32 22 6.5 7.0 1 23 515 537 515 537 0.98 12 12 0.00031 0.021 16.0 1.0 2 23 544 566 543 566 0.95
Sequence Information
- Coding Sequence
- ATGATGAAACTGGAAACGGAAGACTTCTCGTACGATTTGCTCCAAGAATCGTCGTTTATCGGCGACACAACGTGTACCAGTTGTCTCGCCGAGTTCTTGGACGTTGAAGACTTACATGTACACGAAAAACAAATGCACGGGCCTGTGACGAGCCCTAAATACTGCCAGCTCTGTACAGCGACGTACACAGACCTGCTGGACTATGCGGCACACGTGAGGGACGCCCATCTGATGGATTTGAGGAGCTGCCGGTATTGTACTAAAGTGTTTTTAGACGGAGGAATGCTGAAGTTACACGAAAAAAAACACATCGGTAACGACTATACCCTATATTTATGCTCGCAGTGCGATTCAATGTTCAATGCAACTGTTCTATTGGAACTCCATGAATGTAAAACTCATGATAATGGCTATGACGGCTTGGTTCTTAAATGTATGCCTTGTCTGTCATCAGTTCTCAACCTTAAGGTAGTATCGTTGCTGCAATCTGTTGGTAAAAAAATCTTAATCTGTGCTACGTGCAACTTCACATCTACCAGTTTGCAGCTTTACAtccagcatttaaatgaaaaagaatGCGAAGGTTATGCGTGCGATAGATGCTCAGGTATATATAAAACAAAGAAAAGTATTATTAAACACTTGAAATTCGCTAAAAAGTGTATAAGTGTTGACGAATACGCTGATGAGACAATCGAATGCCAGGATTGCCATAAAGTAATCCACCCAAAAGCGTTGCAAGTTCATCTTAAGAATTGTAAAGCACTGAAATGCATTGATTGTAACTTGATTTGTGCTACGATTGATGAGCTTTCCAGACATCAGACCATAGAGCATCCATTAGGCATGAACTTAATCCAGTGCAAGTTCTGCTGCAAAGAGTTTATTGGAACAACACCATTGAAGAAACACATAAATAAAGTGCACAGACCTTACTTCGACCTCTACAAGTACAAGTGCAGGGATTGTAATGCTATCTTCCAACACCCGCAGAAGCTATTTgcacatttttttacaaagcaTAAAGAATTAATGCCATTCAATTGTAAAATTTGCAACAAAACATTCCGAGTACGTAAATCATTCTCACTCCATATCAAATTGGACCATAAGAGTGTTGGGTTCGTTGAATTCAATGATCAATACCATGTGTTCTTCACTGCGAACCGGTCTGAGAAGCCATTTGTACCGTCATGCGTTTTGTCTGAGGAGGATATGCACGAGTCTCAAAGTGAAGACGTTGTGAAAAGTAAGACAAAAGATGACATCATTCAGTCACCAGATCTGCATCAATCTGACACTGACGCTACTAATGCAGAATCAGAGAATGATTGTGTTGAGCCAAAAAAAAGAAAGCTAACTCCAAAACAGATCATAAAAACTAAAAGGTCTAGAAAAATCATAAAGAAGGAACCGGTCCTTATTTACTCGTCAGATGAAGAGCCACTGTTGGTGACAAGAAAGCGCacggtaaaaaataaaaaagttgatTTGAGACGCCAATGGAGATGGAAAAAGAATGCGTTAAAGAAAAAAACACAGTTCACTTGTGAGGTTTGCAACAAAAATTGCTACACATACCAAAACCATCAAAACCACATGAGCACTCATAACAAAAATCTAGAGATAGAGTGCGTCAAATGCTCAAAGAAATTCAACACAACAAATGACCTTACAAAACACATTAATCAAGACCATGTAACTTCCAAACTGACAGAAACATTAAAGAACTTACTTCAAAAGAAGAAACAAGATGATTGGACTCCTAGCGATGATCCAACTCTGAAAGCACCAAAAAAATCAGACAGGTTCACAATACACATGAATAAAGTTAAAATTGATAAAAGCGAAACACCTGCTACTATAACAGCAGTAGACACAGACTTGTCAGCCAAAAATTTCATAGAGAACTTTACCCCGGATGTGAACGACACTTCCAGAGTCAAGATAAGTTCTACTGTCAGCATTACGCGATACTACAGCCCGTTCTATCGAAAGCCTTCAATAAAACTGACGAAATTCAAAGATATACCTACATACGAACGCGTTCCTCTAAAGATGCCTCAAAGATTTAAACAATACGATCAGTTTGTTAAGACCAAAATCAATATCAAGTTAGTAGAGAGACCGATTGAGTCCCCCAAAGACTGTAgtcttcctttatcagagcacAATTACTCGGATAACTTCCAAGATTATGACGATAGGGATAACGATATACCAGAAGTGGCACAGGAGGTATCGCTGGAAGGCACGGAAGAGCCTCCTAAAGAAACAATACCCCCAGACCATATACAAACCAAGATAATTATCCCGAAAATGCCTAAAGGATATTCTAAGATCCATATCGCGACGTTGCAGGCAGAAGCGCCATTCTTCAAAATAATCAAAGTTGATTCTAATAAGTTAACGGAAATAAAGACCGAACAAGAAGTTGTTCCAAAGAATTCAGTTATCAGCCTGCCTGGTGGCACGAAGCTTGTGACGGCTAACCCATTAGCCCACCTCTTGGGTGACACGCCAGTGGATAAAATCTTGGATACGGGAAAGAAGCAATACAAGCCGGTGATCAAAGACTTCCAAGGCATGCTGGCTCAGGCCATGAGGAAGTTAGAGGAAGCGCCGCCGACGAAGAAACGGAAACCCAAAGCCAGCAAGAAGCAATTGAATCAAGATACTATTCAAGATTCTATATAG
- Protein Sequence
- MMKLETEDFSYDLLQESSFIGDTTCTSCLAEFLDVEDLHVHEKQMHGPVTSPKYCQLCTATYTDLLDYAAHVRDAHLMDLRSCRYCTKVFLDGGMLKLHEKKHIGNDYTLYLCSQCDSMFNATVLLELHECKTHDNGYDGLVLKCMPCLSSVLNLKVVSLLQSVGKKILICATCNFTSTSLQLYIQHLNEKECEGYACDRCSGIYKTKKSIIKHLKFAKKCISVDEYADETIECQDCHKVIHPKALQVHLKNCKALKCIDCNLICATIDELSRHQTIEHPLGMNLIQCKFCCKEFIGTTPLKKHINKVHRPYFDLYKYKCRDCNAIFQHPQKLFAHFFTKHKELMPFNCKICNKTFRVRKSFSLHIKLDHKSVGFVEFNDQYHVFFTANRSEKPFVPSCVLSEEDMHESQSEDVVKSKTKDDIIQSPDLHQSDTDATNAESENDCVEPKKRKLTPKQIIKTKRSRKIIKKEPVLIYSSDEEPLLVTRKRTVKNKKVDLRRQWRWKKNALKKKTQFTCEVCNKNCYTYQNHQNHMSTHNKNLEIECVKCSKKFNTTNDLTKHINQDHVTSKLTETLKNLLQKKKQDDWTPSDDPTLKAPKKSDRFTIHMNKVKIDKSETPATITAVDTDLSAKNFIENFTPDVNDTSRVKISSTVSITRYYSPFYRKPSIKLTKFKDIPTYERVPLKMPQRFKQYDQFVKTKINIKLVERPIESPKDCSLPLSEHNYSDNFQDYDDRDNDIPEVAQEVSLEGTEEPPKETIPPDHIQTKIIIPKMPKGYSKIHIATLQAEAPFFKIIKVDSNKLTEIKTEQEVVPKNSVISLPGGTKLVTANPLAHLLGDTPVDKILDTGKKQYKPVIKDFQGMLAQAMRKLEEAPPTKKRKPKASKKQLNQDTIQDSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -