Echr024440.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595860.1:3816170-3838874[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.4 4.3e+02 2.4 1.9 1 23 224 246 224 246 0.79 2 13 8.6 5.8e+02 2.0 2.5 1 20 300 319 300 321 0.91 3 13 0.12 8.2 7.8 0.4 2 23 337 359 337 359 0.95 4 13 2.3 1.6e+02 3.8 1.4 1 20 770 788 770 790 0.83 5 13 0.059 4 8.8 1.3 1 23 802 824 802 824 0.96 6 13 0.001 0.07 14.4 0.4 2 23 830 851 829 851 0.97 7 13 0.0054 0.36 12.1 0.3 2 23 956 977 955 977 0.92 8 13 0.063 4.3 8.7 2.7 1 23 992 1014 992 1014 0.98 9 13 9e-07 6.1e-05 24.0 3.3 1 23 1020 1042 1020 1042 0.99 10 13 0.00031 0.021 16.0 0.9 2 23 1048 1069 1047 1069 0.94 11 13 0.0023 0.16 13.3 1.9 2 23 1076 1098 1075 1098 0.91 12 13 0.6 41 5.7 0.3 1 19 1103 1121 1103 1122 0.85 13 13 0.015 1 10.7 0.7 3 23 1135 1156 1134 1156 0.95
Sequence Information
- Coding Sequence
- ATGTCTGAAGTCAGGAAAAGAAGCAGAAAATCAAAATTGGAAGTCATCGCGAATGACTGTGATTACGAGGTTGTGAATGAGGAGAATGACGAAACGAAACCGCATTTGCAGTTTACCCAGAAACTAGTGAAATTTGAACCTATTACAAGAAATGACCATGATTACTGCAAGCCCGGCTACCAAGGGTTTGCATGTTCTAACCTTCACATTTTCGATGCCTCCAATATATCCTTACGTGGGAGCACAGTCATTGCTGTCCAGCGCACTCAAAGCTCGTCCGGCTCCATGAACGTTGCGGTCAGAGTAGAAGTTGGGCAATTTGATAACTACGGGAGAGAGAAGTCCATGTTTCCAGAAAACAGACAATACTCAATGCTGAAGACGATGGAGTCGCTAATGTGCCAAAGGAGAACCAATAGGAAAGAGAAAGGTGCTATTAAGATGTGCAAGTACGACCCTGAAttgattttcaatgtttctAACCACATAGCTTCGAGTTCAAATAACCTAGCTGATCGGATCTTGGACATTGAAATGAGAAATTTGTGGGGGAACGTTCTGTGCACCTCCAATGAGGTCAGTGCACATGAAACCAAGGTGCAAAAGGCACTAGAAATATGGCAGTCATGGTACAATGGTTCGAGACTGGTACGAGACGGCCCACTCTTCTATCAATGTCATATATGCAACATTGCCTGGTGGAGATTACAGCCATTTCGAGACCACATCAAAACTCATGACATTGAATCTTTGAAAGTTACCCTCGAAGAAAATATTCATGAATGTATGCTTATAGCAAGCTATATACCTGTCAATGAGATGAAATTTATTGATATTGAAGAGGATTGTATGCGGTGCGGAAAGGACATTGAGTTTCATAAGAAAAATTCTCAAGTATACATGTGTCATCGTTGCACGAGAAGCCAATACACATGCTCGGGATTAAGAGAACATGAGTCTATGTGCTTGTACACTAATTTAGCCAACTTCAACATATCTAAAGAAAGACAGTGCACCATTTGCAAATACTTCATCAGCTCTTTAAACGATGTAGAGAAACATATGATTAATTCACATTCCGTGCGGTCAGATATACCCGTCCCAGTCACGTGTAAACATTGTTTGACCTGCGACTCAAAATACTTCACATACAGTACCCACAATTGTTCTAAAAGCGCAAAGAACTCGGCCTGTGATAATTGTTGCAGAAAATTTGCAACAAAACAACTTGCTTTCGCACATATGTGTTCGAAATACAACAGAGAGATTGAATGCAAAATTTGCTCGAAGCCAATTAAAACAAGATGTCAGGAAATGGAGCATGTTTACTTGGAGCACCCAAATAACTATCAGATGGCATATAAATGCACTATTTGCACTAATCAGCATCTGTTGTTTGCCGATGAATTGTCTATTAGAATGCACAGGCAGCAATGGCACCATAAGAAGTCTGATAGGAGGAGATCGTATTATGAAATGatGCTGTTACCGAAACAGTGCTTGCAAGATGCTGATGTGGAAGAAGCATTTCAAACTGATGAAGAAGATTTTTGTATCGCAAACTCGTCCAACGAACCACCGAATCAAAAGATACTGACAGCTGATATTGACGTGACCGTAGACGAAGTTTATATTAAGAGGGAGCCTGTAGAATACAATGAAAATGGAGACATAGATTATGAAGATATGCTTAATAATATGTTCAATCAAAGCGATGAAAAGGAAACTTTAAGTAAAAAGGGTCAAAAAACTTCTAAAGATGTTGTAAAAATGAAACCGACTGTAGAGCTTGATTGGAATGTTCAAGTCAAAAGTGAACCAATTGATGAAATTGATATTATTGATAATCCTGTTGAGGATGTCAAAATCAAGATGGAGCCTGTAGACGAACCTGAAGAATACATGGAATATCAAAACAAGTCAACAGAAATCGACAACCAAAGTAATAATAAGAACTATAATCAAATTGAGAATGAGAATCATAATGAAAGTGAAAATAAGGAACATAATCAAAGTGAGATTCAGAATCAAAATGAAATTGAAACATTGACTGTCAAAATAGAACCTGACATTGATTTAACAGACATTGAAACAGAAAACATCGTTATCAAAAACGAAATAGAAAGTGATGATGAACAAAATCGTGGGGATATATCAACCGAAGTCATTCCCTTCGATCAACTAATAACAGATTTAAACATGTTTAAGTCTGGAGACATGGATTGGGTGTCTGAGGAGGTTTTAAATCCTGACGAGATCTCATTCGATGTCATTAATCCTAGTGGTGTATACAAAAAGAAAAGGATTTACGCATGTCACAAATGTGGATATACAGCCCAACACAAACAATACCGTATCCATGTGACTTCTAAGTGTTCGATATCTCCGGGAATCAATGTTAGCCATCCGTGTTCTATGTGCGGCTTAACTTTTGTGATGTTCAGGAACTATGTGCTACATTTTGAAACACACGGTTATGAAGCAATGTCTTGCCCAAAATGCGGAATGAAATTTGAGACCCTTGTCAAGTTACTGTCACACGTACAGAAACATATTAAGAATAATTTCGTTGGAATTCATGTGCTGGATAAAGGAGGGAAAGAATCGACGAAGGCTTTGAGGAAAGTTAAATGTCAGGAGTGTCATGAGATAGTCCCACAAGTGGACATGTTCGGGCACTGGGAGGCTCATCTCACGCTCAAAGAGAAGACAGCTGAGAAGCCCAAAGAAGAAACTCAGATTAAAGAAGAGCCACCTGAACTGACGGTTGACTGCGAACGTGTTACTATCAACAACAAGACTTTGGAACCAACTGCACTGAAGGCGGCTCTAGaaaatCTGCAATCAAACAATATCAATGAAAAAGAGTGTGTGATCTGTTACCGTACGTTTGCACGTCGCTACGACGTGAAGCGACACGTCGTCGAACACTTGCTCATGGACGCGCATATGAAGAAATCGAAATACAGAGTGTTCCGTTGCCAGATCTGCTTCCAAGGGTTTGAGCGTCAGGAGAAGTATAAGTTCCACATGCGCGACCACGGTTCCATGCCCATATTCAAGTGTGAACTATGCAACAAAACTTTCAGTGATTCCAGCAATTTCGCCAAACACAAGAAGACTCACAATGTCCGCGTGCTTATTTGTGACTTGTGCAGCAAAAAGTTCCATTCAAAGTCGGCTCTGGAGAAACACATAGCGgagCACACTAACTTGCCGACGACCAAATGTGCGTTCTGTGATAAGGTATTCCCGACGAAGCAGAGCTATAAGAAGCACAAATACCAGATACACATCAAGAATAAATTCAAGTGTGTGTTGTGCGATGTAAGCTTTACCAGTCTACAACAGAAATGGGACCACAACTGGGAGGTGCACAAGGAGCGGAAGCAGGCCGCGGACTGCCCCATCTGTCTGAAGTCCTTCCGCAAGTTCCACGACGTGCGCGTGCACGCGCGCGCCGAGCACCGCGCGGAGGTGTGCGTCATCAAGCAGGCGCGCCGTAGGAACGTGCAATTCTACAAGGTGAAGGACCTCACGCTGAAGAACGAGACGGTTGTCGTGCGCGAGTGA
- Protein Sequence
- MSEVRKRSRKSKLEVIANDCDYEVVNEENDETKPHLQFTQKLVKFEPITRNDHDYCKPGYQGFACSNLHIFDASNISLRGSTVIAVQRTQSSSGSMNVAVRVEVGQFDNYGREKSMFPENRQYSMLKTMESLMCQRRTNRKEKGAIKMCKYDPELIFNVSNHIASSSNNLADRILDIEMRNLWGNVLCTSNEVSAHETKVQKALEIWQSWYNGSRLVRDGPLFYQCHICNIAWWRLQPFRDHIKTHDIESLKVTLEENIHECMLIASYIPVNEMKFIDIEEDCMRCGKDIEFHKKNSQVYMCHRCTRSQYTCSGLREHESMCLYTNLANFNISKERQCTICKYFISSLNDVEKHMINSHSVRSDIPVPVTCKHCLTCDSKYFTYSTHNCSKSAKNSACDNCCRKFATKQLAFAHMCSKYNREIECKICSKPIKTRCQEMEHVYLEHPNNYQMAYKCTICTNQHLLFADELSIRMHRQQWHHKKSDRRRSYYEMMLLPKQCLQDADVEEAFQTDEEDFCIANSSNEPPNQKILTADIDVTVDEVYIKREPVEYNENGDIDYEDMLNNMFNQSDEKETLSKKGQKTSKDVVKMKPTVELDWNVQVKSEPIDEIDIIDNPVEDVKIKMEPVDEPEEYMEYQNKSTEIDNQSNNKNYNQIENENHNESENKEHNQSEIQNQNEIETLTVKIEPDIDLTDIETENIVIKNEIESDDEQNRGDISTEVIPFDQLITDLNMFKSGDMDWVSEEVLNPDEISFDVINPSGVYKKKRIYACHKCGYTAQHKQYRIHVTSKCSISPGINVSHPCSMCGLTFVMFRNYVLHFETHGYEAMSCPKCGMKFETLVKLLSHVQKHIKNNFVGIHVLDKGGKESTKALRKVKCQECHEIVPQVDMFGHWEAHLTLKEKTAEKPKEETQIKEEPPELTVDCERVTINNKTLEPTALKAALENLQSNNINEKECVICYRTFARRYDVKRHVVEHLLMDAHMKKSKYRVFRCQICFQGFERQEKYKFHMRDHGSMPIFKCELCNKTFSDSSNFAKHKKTHNVRVLICDLCSKKFHSKSALEKHIAEHTNLPTTKCAFCDKVFPTKQSYKKHKYQIHIKNKFKCVLCDVSFTSLQQKWDHNWEVHKERKQAADCPICLKSFRKFHDVRVHARAEHRAEVCVIKQARRRNVQFYKVKDLTLKNETVVVRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -