Echr024665.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595860.1:6600772-6612312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 0.81 11.0 0.5 1 23 211 234 211 234 0.96 2 11 0.016 1.1 10.6 4.2 1 23 241 263 241 263 0.97 3 11 0.5 34 5.9 0.4 1 23 267 290 267 290 0.89 4 11 0.0016 0.11 13.7 1.5 1 23 319 341 319 341 0.98 5 11 0.017 1.2 10.5 0.9 3 22 353 372 352 376 0.89 6 11 0.0031 0.21 12.9 0.3 1 23 412 434 412 434 0.97 7 11 0.47 32 6.0 0.3 3 22 444 463 442 467 0.87 8 11 9.9e-06 0.00067 20.7 0.5 1 23 475 498 475 498 0.92 9 11 0.00061 0.042 15.1 4.9 1 23 504 527 504 527 0.96 10 11 2.5e-05 0.0017 19.5 0.8 3 23 536 557 534 557 0.91 11 11 0.026 1.8 9.9 2.5 1 23 563 586 563 586 0.98
Sequence Information
- Coding Sequence
- ATGGAGGCCCAAACAAGTAATTTATGTAGCGGCTGCCTGGCAGTCGATCGCCGAATGCTACATATCCAAAACAATTTGAAGGAGCAGTGCTTTTTGCAAATAATTAAAGAACTACCGATCTCCCTACCAAACACTCTTGCACTATGGTTATGTTGGGAATGCGAAGCCAATATCACAAGATTCACCAAATTCAAGCTGCGTGTCAAACATGCATATCAAATTCTGCACGATTTTACTACACAGAATTCAATGTCCAAACTAGAACCAAAATTCTGCATCCAACAAGTAGTTGACATCAAACTGTCTCCTAACTCAGAAAACGATTCCGAAACAATAACTGTTACAACTGTCAAAACAGAGAAAGATAATGAAACGGAAACACCTCACATAAAATATGAAACAGATTTCTCAgacgatgatgataaattaCTAATAGACATATGCAGTAAAGACATCACAAAACCTAAAGTGAAAAAGAACAGTAAAGTGAACAGGAATAGTAAAGTAAAAAGGAACAGTAAAGTGAAAGTGAAGAAGAAAAGTATATTCAATGAGATAGAGCTAACGGAAGAACAAATTGCTAAGGAAAGAAATGATTTGTCGTTGAGAGATGACTATGTCAATGCTATGTTTAGATGTGAGAGGTGTGTTGTGTCATTTCCTAATGAAGACGATATGAAGGATCATATTTTTAAGAAACATGAACTGCATGCATCCAAACACAAATGCAGTATATGTGAGTGCGCATTCAGCACAGAAGTTGCGTTCAACTACCATCGCAGTCGACACTTGAAGAGGTACGAGTGTTTGATCTGCAATGCAAAGTGTACTAGCAAGCTTGCCGTCAGTAATCACCGGGCCGCGGTGCACTTACAAAGTGCAGCATATATGTTGGACCACAACAACTATAGATCACAAGAAAATAATCTTAATagCACAAAATCGTTGGAGAAGTTTCCTTGCGTGCACTGTTCGAAGGTGTTCGGATGGAAGACATCTCTGCGCAAGCATCTAGAGACGCACAGGATTGAAGCTGGCCAGACACGTAGACCCTACTGCGAACCTTGCAGACTCTCATTCACAACCACTGCGAATCTACAAAAGCACGTGAAAACTAGTTCCAAGCACCAAATACAACTCAAACTCAGAAAGTTGAAAGAAACCAATCCTGAAGACTCCAACGATAAACAGATAGCGGACATCAAGTCTAGTGTAAACAGTAAACGCGAGTTGTTCCCGTGTGCGCAGTGCGACAAGAAGTTCCAATGGCGTGGAAACCTGCTCCGACATCTGGACAGCCATGCAGCCAGAGCTAACGGCGAGCTAGTGTGCGTGCCGTGCGCGCGCACATTTTCGTCCATCGCGACCTACAAACAACACATGaagatcagcaaaaaacacGCCACTGAGAACGATTACAAGTACATGTGCAGTGACTGCGGCAAGAAATTTGCGAATAAAACTAAGTTAAAAGACCACGTGGACTGGGACCATCTCAAGAACTATGTACACACCTGTACCGACTGCCAGAAGgttttcaAGACGCACACATCACTGTACCTTCACAAACAAGTTGTTCATAAGAAGGTGAACGCTGAGCATCTTTGTGAAAACTGCGGCAAATCATTCCCgAACCAAACCAAGCTCCGTTCGCACATAATAGCGTTGCACACGAGCGAGTCGCCGTACAAGTGCGGCGCGTGCGGTGCGCGCTTTTCCTGGCACAGCTGTCTGTCTAGACACGTGCGCCGCGTGCACCGCAACACCAAATGA
- Protein Sequence
- MEAQTSNLCSGCLAVDRRMLHIQNNLKEQCFLQIIKELPISLPNTLALWLCWECEANITRFTKFKLRVKHAYQILHDFTTQNSMSKLEPKFCIQQVVDIKLSPNSENDSETITVTTVKTEKDNETETPHIKYETDFSDDDDKLLIDICSKDITKPKVKKNSKVNRNSKVKRNSKVKVKKKSIFNEIELTEEQIAKERNDLSLRDDYVNAMFRCERCVVSFPNEDDMKDHIFKKHELHASKHKCSICECAFSTEVAFNYHRSRHLKRYECLICNAKCTSKLAVSNHRAAVHLQSAAYMLDHNNYRSQENNLNSTKSLEKFPCVHCSKVFGWKTSLRKHLETHRIEAGQTRRPYCEPCRLSFTTTANLQKHVKTSSKHQIQLKLRKLKETNPEDSNDKQIADIKSSVNSKRELFPCAQCDKKFQWRGNLLRHLDSHAARANGELVCVPCARTFSSIATYKQHMKISKKHATENDYKYMCSDCGKKFANKTKLKDHVDWDHLKNYVHTCTDCQKVFKTHTSLYLHKQVVHKKVNAEHLCENCGKSFPNQTKLRSHIIALHTSESPYKCGACGARFSWHSCLSRHVRRVHRNTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -