Echr024433.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- PRDM15
- Assembly
- GCA_951392215.1
- Location
- OX595860.1:3742282-3761993[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.38 26 6.3 1.2 1 23 480 502 480 502 0.97 2 10 0.012 0.79 11.0 0.7 1 23 509 531 509 531 0.94 3 10 0.094 6.4 8.2 0.7 1 17 535 551 535 552 0.90 4 10 0.0085 0.58 11.5 3.2 3 23 564 585 563 585 0.97 5 10 3.7e-05 0.0025 18.9 1.3 1 23 593 615 593 615 0.96 6 10 0.0004 0.027 15.7 2.9 1 23 620 642 620 642 0.98 7 10 0.017 1.1 10.5 0.5 1 21 650 670 650 675 0.93 8 10 0.0001 0.007 17.5 1.8 1 23 680 703 680 703 0.97 9 10 0.00024 0.016 16.4 0.2 3 23 711 731 709 731 0.96 10 10 0.0067 0.46 11.8 0.8 3 21 742 760 741 761 0.95
Sequence Information
- Coding Sequence
- ATGTCTTCGTTCTTATGTTTTGTATGCCACAGCACAGTGAATGCTGATACAAATGAGGATACACGGGATAAATACCGAGAAGTTATAGGAATGCACTTATGTCCAGATTCTCACCTGTGCTACATTTGCTGCCATTTCTTGAACAAAATGTGGCTTTTCAAGTCAATATGCTTGAAGAGAAGCTTGGAATATCCAGTACTATTCAGTGAAAAAGGAACCATAAATTTGCAAAGAAGCGACACACAGGTCTGCATTCTGTGCCCAGAAGACATCTGCCTTCAACACCTCAATTCTGACTACCATTTCTATAACAATACAGAAAACTCCCCAACGGACTTTGAAGAACACAAATACATACAATTACATGAAGAAATGCATTTTGGATTACTACCAAACAATGTGGAAGTTCAAACAGATGATATATTTGATCAATTTAATGTTAACTTACTAAAATCTGACACTGGTGATGACCATTTCAATAACGAAGAGTTTCTAGTTGGTATCAGTAAAGAAAATAATGAAGTTAATACTAGGAAAGATGTTGATGAATTTATATTTGGTAATGATAGCATAGAATCTCCACCAGAAAATATTAATAAGATAGAATTAACGAATTTAGAAGAAATCTCTGAAGTAAATATAACTTTAACAGATTTGAATGTAAGAAATTTTGTTGAAACGTCAAAGGAATTTAGGAATAATGATTTTCTAGCTAAATCACAAGATTATTTTGTAAAGAATAATATCTTTGTTGAAAAATCACAAGAATTTGGGAGAAATGattgttttgttgaaaaaacACAGTCGCAAGAATATGTAAGGAATAataattttgttgaaaaatctCATGAACTTGTAAGGAATAATGATTATATTGAAAAATCACAAGAATACTGTGTAAGGAATAACAATTTTGTTGAAAAACCACAAGAACTTATTGTGGAAAATAATCTGTTTGTTGAAAAATCACAAGAAGTTGTTCTAAGAAATAATGATATTGTTGAAAAGTTGCCGGAACTTGTGAGGAATATTGATTTTGTTGAAAAATCACAGGAATTAGTTATAAGGAATAACGATTTTGTTGAAAAAACGCCTGAAgttgtaataaataatgattatgtTGAAGTTCGAGAAGTTATTAATGAAAATTTTTTATCCAAAGAAATTAATGTAGGTCCAATTTATAGTGAAAATCAAGACATTCCTAATGACGATAAAAACCCATTCAATGATTTTCCAAGTAATGACAATGAAAACCCTTTTGAAGAAAGCAGTTCAGAAGAGACAGATAATGACACAGACTCAAACGAAAATGCTAAAACTGAAACAGgacagacttcaaaaaataacatttacatCAAAATAACGCTCAGTCTAAAAGAACAGAAGATGGAAATAGAAGCAAATAGAAGAGAAAAGAAGTATACAGAAgcagtttttaaatgttacaGCTGTGCCATGGGATTTTTATTCAAGGATTCCTATCAAGCTCATATGATGAGGCACGAAGagTCAAATGGTGAACACTTCTGCTCAATATGCACACTTCGGTTCGCGAACCCGGCGGTCCTGCGCTCGCACCGCGCCAACCACGCGGTTAGGTACCAGTGTACCTACTGTGAAAAAATGGTAAAAAATAGACACAGACTGACACACTCTTGCCAAGGAGAGACGACAAGCAAAGTCGCGTGCCATCTCTGCGAGAGTGTCTTTCAAAGAGCAAGTCACTACAAGCAACATTTAAAACGTGCTCATCCAAAGAAAAGTAACCGAACATACCTCTGCAACATTTGCGGCAAGAGATGCAATAACCAGGGTGCCGTCAGGACTCATATGTTGACGCATCTAAACAGAAAATTCTCCTGCGAAGTATGTACTTCAACTTTTAGCAGTCCTTACGCGTTAAATCACCACAAAAAGAAGCATGAATCGTTTCCAACTGAGCTACACTACTGTGTGACATGTAATATTGGATACAGTAGCAGAAAGAGTCTGTTAGCACATCAAAAGAACGCATTGGCACATAAGGAAAaagtGTACAAATGTCCTGTGTGTGACAAGACATGTCCGACTCTACGTGCATTGCACAATCATACAGCCACCGTGCACGCCAGGACGAAGGATCTGTTCTGCGCTGTATGTCCCGCTAGATATTCTACCAGAAAGGGTTTGGTACGACACATGCGAAGTCACCGTACTGATGGATTGAATCAGTTGCCTCTGTGCCACGCTTGTGGAGAAACTTTCAAGAGTTCGAGTATTTTGAAGAGACATCTTAAAAATGTTTGTGAGAAGGACAAACTAGAAGAAGAATTATCAATTTATTACgaacaataa
- Protein Sequence
- MSSFLCFVCHSTVNADTNEDTRDKYREVIGMHLCPDSHLCYICCHFLNKMWLFKSICLKRSLEYPVLFSEKGTINLQRSDTQVCILCPEDICLQHLNSDYHFYNNTENSPTDFEEHKYIQLHEEMHFGLLPNNVEVQTDDIFDQFNVNLLKSDTGDDHFNNEEFLVGISKENNEVNTRKDVDEFIFGNDSIESPPENINKIELTNLEEISEVNITLTDLNVRNFVETSKEFRNNDFLAKSQDYFVKNNIFVEKSQEFGRNDCFVEKTQSQEYVRNNNFVEKSHELVRNNDYIEKSQEYCVRNNNFVEKPQELIVENNLFVEKSQEVVLRNNDIVEKLPELVRNIDFVEKSQELVIRNNDFVEKTPEVVINNDYVEVREVINENFLSKEINVGPIYSENQDIPNDDKNPFNDFPSNDNENPFEESSSEETDNDTDSNENAKTETGQTSKNNIYIKITLSLKEQKMEIEANRREKKYTEAVFKCYSCAMGFLFKDSYQAHMMRHEESNGEHFCSICTLRFANPAVLRSHRANHAVRYQCTYCEKMVKNRHRLTHSCQGETTSKVACHLCESVFQRASHYKQHLKRAHPKKSNRTYLCNICGKRCNNQGAVRTHMLTHLNRKFSCEVCTSTFSSPYALNHHKKKHESFPTELHYCVTCNIGYSSRKSLLAHQKNALAHKEKVYKCPVCDKTCPTLRALHNHTATVHARTKDLFCAVCPARYSTRKGLVRHMRSHRTDGLNQLPLCHACGETFKSSSILKRHLKNVCEKDKLEEELSIYYEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -