Echr024360.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595860.1:2523849-2537198[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.4 2.3e+02 3.3 0.9 1 15 97 111 97 115 0.81 2 12 0.018 1.2 10.5 0.4 2 23 129 150 128 150 0.95 3 12 3.5 2.4e+02 3.2 0.3 1 19 154 172 154 174 0.87 4 12 8.3e-06 0.00057 20.9 1.2 1 21 183 203 183 204 0.94 5 12 0.0067 0.46 11.8 1.3 2 21 212 231 212 232 0.92 6 12 0.00018 0.012 16.7 0.2 2 23 248 269 247 269 0.94 7 12 0.00023 0.016 16.4 0.2 1 23 274 296 274 296 0.98 8 12 0.00049 0.033 15.4 5.6 1 21 305 325 305 330 0.94 9 12 0.0011 0.074 14.3 1.8 1 23 338 361 338 361 0.89 10 12 0.013 0.85 10.9 0.2 1 23 367 390 367 390 0.88 11 12 0.0051 0.34 12.2 0.4 3 19 403 419 401 420 0.92 12 12 0.044 3 9.2 0.8 1 23 433 456 433 456 0.98
Sequence Information
- Coding Sequence
- atgcttgGTATTAAAGACGAAGACACCGAGGACACACAATACTCAGAGTTCCTGTCGCAAGAGCAGGCTGTCTCTTCAGATGAGGACATACAGCTCTCCCGGATCAAGGAGAGGAAAGTTAAgaaagataaaaagaaaaggaAGAAACATAAGATCAAGAAGTCATCCCAAAGCAGAAAACTCAAGAACCTCCCGGAGGACGTTGTTGAGCTGTACACAATGAGTGAGGAGGAGATGTGGCTGGTGCGCTCGAGTGACGTCGCCAGTGAGGGGTTCACGCGACTGCGGCACAAGTGTGAGCACTGCGTTATAGGATTCAACACGCTCAAGCTGAAGGAGTACCACGACAATGGGAAACATAAGCCGaaagcCGGCAAGTCTCTTCAGTGTGACGTCTGCAAAGCTTACTTCCTCACTAAAGACAATCTCACCGTGCACCGTTCACTGCATCTCGCGGCATACAGGTGTCGACTGTGTGGCGTCATCACAACTATGAAGCGACTTATGAGTGAGCACGCCTGCGCTAAGAGCAGCACGCCAGACGAGTACCCTTGCACGTACTGTGACAAAGTGTTCAGTTCGAAATCCAAGTTGTCCTATCACCGAAGCACGTCATGTCGCGCGGAGCGGCCGCAGTGCGACTGCTGCGGCAAAGTGTTCGCCAACAAGATGACTCTCAAGTACCATCTCAAATTATTACCGCTGAAGAAGGAAGACAAGCCTAAAGAGAAGCTGTACATTCCTTGTAAGGGTTGCAACAAAGTGTTCCAATCCAAGAAGAGCTATCGTGCGCATGTCGTGATTCACGAAGGTCACTCCTACCCGTGCCCGATTTGCGGGAAACTGTTCATGTGGAAACGCAATCTGTCGCGACACACGCGCGCGCACCGCGACCGAGACGCAGGCGCCACGCACCAGtgtcGCGAGTGCAACAAGACATTTGCGTCGCGCGACTGTTACAACAACCACATGCGACTCAGCAAGCGACACGCGAGCGAATCCGCCTATGTACACGAGTGTAACTACTGCGGCAAGAAGTTTCCCACAAAGTGGTGCATGGTCGACCACGTGGACTGGGACCACTTGAAACGCGTCAAGTACCAATGCAGCGTCTGCttcaagGCGTTCAAGACTGCAAAGATAATGGTGGCGCACGTGAACAACATCCACGCGGGCCGGCGACGTGAACCGGACGGTGAACATCTGTGCGACGTGTGCGGCAAGTCGTACAAGACGGTGAAGCGGCTGAAAGCCCACGTGTGGGCCATGCACACTCAGCGCTCCACCGCCAAGAGCTACAAGTGCTCGCTGTGCGCCGCATCCTTCACCTGGCAGACCTCCATCTACAAACATATGAAGATGATGCATTCCAACAAACGGACCAAGGTAATGATGCGTTCCAACAATTTTGCCAAGGTGATGGTGCTTTTCAACAAGCAGATCAAGGCGTCGCGCGCACCGTCTGTCCGTAAGCAGGAGCCGTACGCCGACATGCAGTACTTCACGCACGCGCTGCAGCCGTTAGCACAGAACGTactgtaa
- Protein Sequence
- MLGIKDEDTEDTQYSEFLSQEQAVSSDEDIQLSRIKERKVKKDKKKRKKHKIKKSSQSRKLKNLPEDVVELYTMSEEEMWLVRSSDVASEGFTRLRHKCEHCVIGFNTLKLKEYHDNGKHKPKAGKSLQCDVCKAYFLTKDNLTVHRSLHLAAYRCRLCGVITTMKRLMSEHACAKSSTPDEYPCTYCDKVFSSKSKLSYHRSTSCRAERPQCDCCGKVFANKMTLKYHLKLLPLKKEDKPKEKLYIPCKGCNKVFQSKKSYRAHVVIHEGHSYPCPICGKLFMWKRNLSRHTRAHRDRDAGATHQCRECNKTFASRDCYNNHMRLSKRHASESAYVHECNYCGKKFPTKWCMVDHVDWDHLKRVKYQCSVCFKAFKTAKIMVAHVNNIHAGRRREPDGEHLCDVCGKSYKTVKRLKAHVWAMHTQRSTAKSYKCSLCAASFTWQTSIYKHMKMMHSNKRTKVMMRSNNFAKVMVLFNKQIKASRAPSVRKQEPYADMQYFTHALQPLAQNVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -