Echr023502.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595858.1:11129081-11142972[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.7e-05 0.0018 19.4 2.5 1 23 328 351 328 351 0.97 2 9 0.34 23 6.4 6.9 2 23 359 380 359 380 0.96 3 9 0.00044 0.03 15.5 4.6 2 23 412 433 411 433 0.97 4 9 0.0003 0.021 16.0 0.3 1 23 437 460 437 460 0.98 5 9 0.13 8.9 7.7 0.2 2 19 474 491 473 493 0.92 6 9 9e-05 0.0061 17.7 2.4 3 23 527 548 525 548 0.95 7 9 0.0065 0.44 11.8 0.0 2 23 567 588 566 588 0.97 8 9 7.7e-05 0.0053 17.9 1.1 1 23 594 616 594 616 0.99 9 9 1.9e-06 0.00013 22.9 2.3 1 23 622 644 622 644 0.98
Sequence Information
- Coding Sequence
- ATGCCTGATACCAAATTATGCCGGATTTGTGTGCGAAAAGATGTGAAAATGTATGAACACGATCGATTCCAgttgaagttctactacaaagaAGTTACCGGCTCCAAAATATCTAAAAGAGATTGCTTACCaaagtggttttgttttgagtGTGCAGCATTGCTGCACAAATTCCACGAGTTCAAAAGAAAGTGTTACAATGGAcagaaaatattcaaaaaactgCTAGAGACAGGATGTgcaaacttggACGACATAACTAGAAGAACcaaagtaacaaatatacaatcTCACTTGCAAATTCTATCAGCATCAAGAAACAAAAATGTCAAAACTTATGCAGTAAAACACAGTGAAATAGTTCATACCAGTAAAAAATCCAAAATTAACAGTAAAaagaataaatacaataattttacAGAAGTATTTGTTGATGATGTTAAATTTGAAatagacaattcaaaattatctattgaaaaaATTCTAGAGAAAACGTCAGCAGATATTGAACATCTTACTGAAGCAAATGATGATCAACTTTCAATCGATGATGGTGGCTTAGATAATAATGACATAAACTTTGACGATTCTAATGACAGTATACCACTTATAAATAATGGTAATGATGTAGGTAATGATTTTAATGATGTAGTAAATGATGCTACAGAAACAAGTCACATTGAAGAACTAACAAGTCATGACATTGATAGAACAAGTCATGACATAGAAAGAACAAGTATTGACATAGAAAGAACAAACACTGTCACAGAAAGAACAAGCTATGACGAAGAAAGAATAACCTCTGTCATAAAAAGTACAATTAATGTTAGCCCTGATAAAAATTTAGACAACAAATTTCAAAGATCtgtcaaaaaaaagtttttggatGAAAATCATTGGAACAAGATAACTTTGTCAGATGAAGAGGCAACGAGGAGGTTCCAGTCAAAAGCTTTAGAACAGAAGTACTTGACGGCGGATTTTAAATGTACGGATTGTTATCGGACGTTTTCGCAGGAGGATATGATGAAACGGCATATTAAATTGAGGCATTGTGAGTCGCTCGGCCCCAACGAGTGCCGACATTGCCACATGCGGTTCAAATGGAAGTCTCGACTCCAAAAGCATTTGAAAGAACATTACACCATCTACAAATGTCTGAGATGTGAATTGTCCTTTCCTGTCGAaATTTCAGCGTTTCAACACGATTATTCTCATAATGGCGTCACATGGACTTGCGTGCATTGCGGTCAAGGATTtagGCATAGTTCTACATACTACACGCATCTCAGAAAGCACAAGAGTAAATACGTGTGCTCGCTCTGCGGCGTCTCGTTCGTCAGCGAGTTTGGACTTTTCATGCACAGGCGCGTCAAACACGTCATCAATCACGATTCTAAAGAGGAAACTTCCAACACGTACTGCAAAATATGTGACATAAAATTCGACACACTGAAGGGCTATGAGGAACACTTCGCCGAGTCGGCGCTACATGCCACTGAAGTTGTTGAAGGTGGAACGTGCTTACCGCTGAAGACCAGATGCACCAAGAAACGAGTACCGCGGATATCAACTAACTGTACTACTTGTGGAAAAACATTCTCTACATACGCAGCGTTCACCAAACACCATTTATCAGTGCACCCTGGACTTGCCCTGCCTAAGTCCAAGACTGACAAACAAGATGGGCAGAGGCAAGTCTGCGAAGTGTGTGGCGTTACATTAGCGAGTACATGGTCCTTAGTCAACCATCTTAACACGCACACAAGAGACAAACGGTACACTTGCAAAACATGTGGCATGCAGCTTAGTTCCAGGAGCGTATTGCAAAGGCATCAGTTGACTCACACCCACGACAAGAACTTCGTCTGCAATATGTGCGATAAGAGATTCTCTCACCGCCCCGGCCTCAGACTCCATTTACGAACACATCAGAAAGACCTGAGCCCGACTGGtAGCAGAAAGAAAAAGCCCGAACAGCAAAATGTTATAGAATACTTCAAAAATTACGGAAATTTATCTACCAATTTTAGGTAG
- Protein Sequence
- MPDTKLCRICVRKDVKMYEHDRFQLKFYYKEVTGSKISKRDCLPKWFCFECAALLHKFHEFKRKCYNGQKIFKKLLETGCANLDDITRRTKVTNIQSHLQILSASRNKNVKTYAVKHSEIVHTSKKSKINSKKNKYNNFTEVFVDDVKFEIDNSKLSIEKILEKTSADIEHLTEANDDQLSIDDGGLDNNDINFDDSNDSIPLINNGNDVGNDFNDVVNDATETSHIEELTSHDIDRTSHDIERTSIDIERTNTVTERTSYDEERITSVIKSTINVSPDKNLDNKFQRSVKKKFLDENHWNKITLSDEEATRRFQSKALEQKYLTADFKCTDCYRTFSQEDMMKRHIKLRHCESLGPNECRHCHMRFKWKSRLQKHLKEHYTIYKCLRCELSFPVEISAFQHDYSHNGVTWTCVHCGQGFRHSSTYYTHLRKHKSKYVCSLCGVSFVSEFGLFMHRRVKHVINHDSKEETSNTYCKICDIKFDTLKGYEEHFAESALHATEVVEGGTCLPLKTRCTKKRVPRISTNCTTCGKTFSTYAAFTKHHLSVHPGLALPKSKTDKQDGQRQVCEVCGVTLASTWSLVNHLNTHTRDKRYTCKTCGMQLSSRSVLQRHQLTHTHDKNFVCNMCDKRFSHRPGLRLHLRTHQKDLSPTGSRKKKPEQQNVIEYFKNYGNLSTNFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -