Echr021954.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595857.1:417231-418725[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.12 7.9 7.9 2.3 2 23 151 173 150 173 0.90 2 10 0.17 12 7.3 0.1 1 20 176 195 176 197 0.90 3 10 0.19 13 7.2 0.5 1 21 201 221 201 224 0.90 4 10 0.00041 0.028 15.6 0.7 1 23 227 249 227 249 0.96 5 10 6.8e-05 0.0046 18.1 0.4 2 21 254 273 253 274 0.94 6 10 0.00055 0.037 15.2 0.3 1 19 293 311 293 316 0.94 7 10 1.1e-06 7.2e-05 23.7 0.9 1 23 322 344 322 344 0.97 8 10 8.9e-05 0.0061 17.7 0.9 1 23 350 372 350 372 0.99 9 10 0.00053 0.036 15.2 1.1 1 23 378 401 378 401 0.96 10 10 0.0002 0.013 16.6 1.6 2 23 407 428 406 428 0.96
Sequence Information
- Coding Sequence
- ATGAATGCTGAGGAATCTGAAATAAACGTGCTTATTTCGAATATTGTTGACGAAAAGCGTTACAGCCATTGCAGGTTATGCCTGAAAAGTATGCACAGTGATAATTACGCCAAGTTTGAGGATAATATCGACTACACTGGTTCCAATGAGTTCATAGGGCTTACGGTTGTTCTTGAGAAATTACTAGGACCACAGATCTCCCAAGAAATCGCAGGAATAGATGCTGTGTGCACTAGGTGCCTGAACAAGGCTGTGGATGCCCTAAAATTTATAGAAAGCtgcaaaaacacaaataaaagacTGAATAGGATACTCGATAGCCTTACTTTAACATTGAGTCCCGAAATAGACACTTCTTACAAAAAGATGATGTATATTGTGTGTAAGGAGTACAGCTCTCAGTTGATTTTAGTTGGGGAAGAGACAAGACCTAAGAAAGTCCCTAAAGTGAAATGTTCCATCTGTAAAGAAACTTTTCACAGCACTGAGGAGGTTAAGGAGCATACATTCAATAAACATGGCTTGTATACCTGCGATAAGTGTCAGTACACTAGCACTAATGAAACTGTTTTGGTGGAACATGAAATGAGTCCAGCATTGTATAAATGTGCCTCCTGTCCCATAACAAGATGTACAGAAGACAGCCTAAAGGAACATGAAGACGGTTTGCATGGAATGCATGTTTGCAAGGAATGCGGAAAGTCTTTCCAGGGTTTAGATAAATTGCTCATCCATGAGGAAAAACATTCAACTAAAAACCAATGCCCCAAGTGTGGAAAAGTTTACACAACAAGAGAATTCTACCAGAAACATGTGAAGTTGTGTCTGGCAGGACTAGTTAGACCTCACCCACTGAGAAGTGAAATTCATAAGGCATATTTTTGCCAAGAATGTGGGAAAGGGTATTCCACTCCGGGAGGATTGAGAGTCCATGACAAGTTTGTCCATGGAAATGCACAGCCCCATGTTTGTAATCAATGTGGTAAGAAATTTACCGCTCCAAGTTACCTGAAAGCTCATCTGATCACACACACCGGAGCAAAGAACTTCAAATGTGATATTTGTAACGGTAAATTTGTCACCAAGGAAGCTCTGTTGTACCATACAAGAAGACATACAGGTGAAAAACCGTATGCTTGCAACTTGTGTGGAGAAAAATTTGTGAACTCATCATCAAGAGCTGATCACATCAAGCATAAACATATCGGCCCAACTCTAAACTGCGAGTTGTGCGAGAGAAAGTTCGTCACAAAGAACTTTTTGAGGCTTCACATGAATAAGCACTATGATCCAACTAATAAATTGTACATTGGAAGGAGCACAATACCTCCAAATGTTCCAGGACACCATAACATGAGGTGTTAA
- Protein Sequence
- MNAEESEINVLISNIVDEKRYSHCRLCLKSMHSDNYAKFEDNIDYTGSNEFIGLTVVLEKLLGPQISQEIAGIDAVCTRCLNKAVDALKFIESCKNTNKRLNRILDSLTLTLSPEIDTSYKKMMYIVCKEYSSQLILVGEETRPKKVPKVKCSICKETFHSTEEVKEHTFNKHGLYTCDKCQYTSTNETVLVEHEMSPALYKCASCPITRCTEDSLKEHEDGLHGMHVCKECGKSFQGLDKLLIHEEKHSTKNQCPKCGKVYTTREFYQKHVKLCLAGLVRPHPLRSEIHKAYFCQECGKGYSTPGGLRVHDKFVHGNAQPHVCNQCGKKFTAPSYLKAHLITHTGAKNFKCDICNGKFVTKEALLYHTRRHTGEKPYACNLCGEKFVNSSSRADHIKHKHIGPTLNCELCERKFVTKNFLRLHMNKHYDPTNKLYIGRSTIPPNVPGHHNMRC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01183218;
- 90% Identity
- -
- 80% Identity
- -