Basic Information

Insect: Epirrita christyi
Gene Symbol: -
Assembly: GCA_951392215.1
Location: OX595860.1:5813930-5832413[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0014 0.093 14.0 0.8 1 23 287 310 287 310 0.94

2 11 0.11 7.1 8.0 2.0 1 23 314 336 314 336 0.98

3 11 0.0038 0.26 12.6 0.1 1 23 341 364 341 364 0.91

4 11 0.00039 0.026 15.7 0.2 2 23 368 390 367 390 0.95

5 11 0.00039 0.026 15.7 0.0 3 23 400 421 399 421 0.97

6 11 0.26 17 6.8 0.6 1 20 429 450 429 455 0.87

7 11 9.7 6.6e+02 1.9 1.7 3 16 475 488 474 498 0.68

8 11 0.00051 0.035 15.3 0.6 1 23 511 533 511 533 0.95

9 11 0.00019 0.013 16.7 2.0 1 23 539 561 539 561 0.98

10 11 1.6e-06 0.00011 23.2 0.2 1 23 566 588 566 588 0.99

11 11 0.00028 0.019 16.1 0.2 1 23 594 617 594 617 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0014	0.093	14.0	0.8	1	23	287	310	287	310	0.94
2	11	0.11	7.1	8.0	2.0	1	23	314	336	314	336	0.98
3	11	0.0038	0.26	12.6	0.1	1	23	341	364	341	364	0.91
4	11	0.00039	0.026	15.7	0.2	2	23	368	390	367	390	0.95
5	11	0.00039	0.026	15.7	0.0	3	23	400	421	399	421	0.97
6	11	0.26	17	6.8	0.6	1	20	429	450	429	455	0.87
7	11	9.7	6.6e+02	1.9	1.7	3	16	475	488	474	498	0.68
8	11	0.00051	0.035	15.3	0.6	1	23	511	533	511	533	0.95
9	11	0.00019	0.013	16.7	2.0	1	23	539	561	539	561	0.98
10	11	1.6e-06	0.00011	23.2	0.2	1	23	566	588	566	588	0.99
11	11	0.00028	0.019	16.1	0.2	1	23	594	617	594	617	0.96

Sequence Information

Coding Sequence: ATGAACGACAATCCTTCTGATGCAAGTATAAACCTCGACCATGTGTATGAGGCCTCAACAATAGACATTCGGTTgccaaaaaaacaagaaattaaaTGGGAAAGTGATTCTATTGAAGAAGATCAAAATTATCAAGAAATTGATTCAAATGAGAATGTTTTACTATATAATCGTAAGCAGGAACATGATTTACAAGACACTGATTTACAGGAGCATGATTTACAAGATACTGGTTTACAGGAGCATGATTTACAAGATACTGGTTTACAGGAACATGATTTACAAGATACTGATTTACAGGAGCATGATTTACAAGATACTGATATAACTGATTCCGATTTGCAagtacattatttacaaaataattacatCAAAAATAATGATAGCAGTAGCGATGATAACACATGGGACCCTGTGTTTCCGGACAGCGATTTAGACGAagacaaacaaataaatcaagAACAAGGGACAAAAAGAAAATTTGGTACAGAAATTGATGTATCATGCCAGCAAGATTTCAATTTATTGGATGAAAATGATCAAGAAATGATAGTGATACAAGGTAGATTATTGGCGCTAAAACTTAGAATATTGCAGTTACTGGACCTCGGAGAGTTCCAAGACCTGGGGCATCCCATGAACAAGGAGATATTCCTGAAGATGTTTGAAAAGGTTGACAAGACCTGTTTGTCAACAAATGCGTCATCAGAACTACCGAGACTAAGGAAGTACCTCCAAATTCTAATTAAGAGATTTGACCCGAAGTATGAGACAGTATTCAACATACAGTACCTCACCACTTTTGATGAGAAATTGGCAGAATTCCACCATAGGCGTCTCAGCAAGCCGTCGCGTCCGCACGCATGCGCGATCTGCGCAATGCGGTTCACTTCATACAGCAACCTGCGCGATCACGAACAGAGAGACCACTACTCCGTGTACCGCTGTAAACAGTGCCCGCTCGTCACTTACAACTTTGACGCCATGCTGAACCACTACCACATGCACGAGGGTATGAAGTACTCGTGTGATTTGTGTCCGACGGTGACCAGTAGTCGGAGTTCTCTGAACGGGCACCGCGTGCAAGCGCATGCGACGCTCACGTGCGCCATCTGCAAACGCCGCTTCGTGTCACAGCCCGGACTAAATGCGCACACCAAAATCAAACATGGCgtCTCGGCACTTGTGCGCTTGCTGTGCGAGGAATGCGACGAGACGTTCGTGTCGGCGAACGCTTTGCAAGAACACGTGCAAAAGGAGCATCCGAACGGACCCGTTGAAAAGTTCCATTGCCGCTTTCCGAATTGCGGGTTGAAGTTCCCCTCAATAGAAGAGTTGAAGGTTCACAAGGCGTTGATGAAACACACCAGCACGCGGCGCAGTTGGCAAAGGGCACACAGCAAGTTGGTCGGTCACAGGATTTGTCCCGTTTGCGGGGAGCAAGTCCCGAACACGTCTGCGCTGGCGCTGTACAGGCACCATATGACGAATCACGCAGGCGTGCACTACGAGGTCGCTAAGATCGGCAAATTCCTGTGCGAACAATGCGGCAAGGACTTTAAGATGAAAGCGTCCTACCTCGAACACCTAAACAGTCACTCGGGGGCGAAGCCCTACACCTGCAAGCAGTGCCCCGCGCGCTTTGCTAGACACAGCCGACTCGTCACCCACATGGAGCGCCACGGGCCCAAAAAATATCGCTGCGAGCAATGTGGCAAGATGTACCCGACCAATGCCAACCTGTGGCAGCACGCTCAGACGCACACCGGTATCCGACGCTTCAAGTGCGACCTGTGCGACGCCACGTTTGTGCACAGCGCGGGGCTCAGCGAGCACGTGCGCGGTGTGCACCTGCACATTCGCAGGGTTAAGAACAAGAccgttaaaaaagaaaaaaaagaataa
Protein Sequence: MNDNPSDASINLDHVYEASTIDIRLPKKQEIKWESDSIEEDQNYQEIDSNENVLLYNRKQEHDLQDTDLQEHDLQDTGLQEHDLQDTGLQEHDLQDTDLQEHDLQDTDITDSDLQVHYLQNNYIKNNDSSSDDNTWDPVFPDSDLDEDKQINQEQGTKRKFGTEIDVSCQQDFNLLDENDQEMIVIQGRLLALKLRILQLLDLGEFQDLGHPMNKEIFLKMFEKVDKTCLSTNASSELPRLRKYLQILIKRFDPKYETVFNIQYLTTFDEKLAEFHHRRLSKPSRPHACAICAMRFTSYSNLRDHEQRDHYSVYRCKQCPLVTYNFDAMLNHYHMHEGMKYSCDLCPTVTSSRSSLNGHRVQAHATLTCAICKRRFVSQPGLNAHTKIKHGVSALVRLLCEECDETFVSANALQEHVQKEHPNGPVEKFHCRFPNCGLKFPSIEELKVHKALMKHTSTRRSWQRAHSKLVGHRICPVCGEQVPNTSALALYRHHMTNHAGVHYEVAKIGKFLCEQCGKDFKMKASYLEHLNSHSGAKPYTCKQCPARFARHSRLVTHMERHGPKKYRCEQCGKMYPTNANLWQHAQTHTGIRRFKCDLCDATFVHSAGLSEHVRGVHLHIRRVKNKTVKKEKKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -