Echr022014.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epirrita christyi
Gene Symbol
-
Assembly
GCA_951392215.1
Location
OX595857.1:2298013-2302036[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0023 0.16 13.3 2.1 1 23 156 179 156 179 0.95
2 16 0.00019 0.013 16.7 0.2 3 23 190 211 189 211 0.97
3 16 0.013 0.85 10.9 1.0 2 23 224 246 224 246 0.97
4 16 3.3e-05 0.0022 19.1 1.1 1 23 255 278 255 278 0.97
5 16 0.00018 0.012 16.7 1.2 2 23 291 313 290 313 0.96
6 16 3.4e-05 0.0023 19.0 0.8 2 23 342 364 341 364 0.96
7 16 1.2e-05 0.00083 20.4 1.2 2 23 374 396 373 396 0.96
8 16 0.14 9.6 7.6 1.2 3 19 402 418 400 421 0.92
9 16 0.0007 0.047 14.9 0.5 2 21 426 445 425 448 0.94
10 16 0.0031 0.21 12.8 0.4 3 23 458 479 457 479 0.96
11 16 0.0045 0.31 12.3 7.3 1 23 484 507 484 507 0.91
12 16 0.0055 0.38 12.1 3.4 1 23 518 541 518 541 0.93
13 16 0.015 0.99 10.7 1.9 1 23 560 583 560 584 0.92
14 16 0.82 56 5.2 2.8 2 23 616 637 615 637 0.97
15 16 0.0051 0.35 12.2 0.3 1 23 703 725 703 725 0.97
16 16 0.24 16 6.9 2.0 1 23 731 754 731 754 0.96

Sequence Information

Coding Sequence
ATGTCGCTACTAACCGAAGGCAATATAAAGGTCGAAAAGGATGAACGCAAAGACCCAACATCTTTTCTACCTGAAGAAGCAATGTGCtatgagataaaaaaaaagaaaaagaagaagaaaaagaaaaagcagGAAGACCCTTTTAAGGATGTAGAAGAGAAGTTATTGGTGAATCGGGAACCGGATATAACCGCCCTGGACCCGGATATAGGGAGTTTGGATCCGGAAGTAACGATAAAGGTTGAGGATATTGAGGTAGCTTTGAATGTTGATGATTTCGACAATGATGATGGACTACTCATGGAATCCTACAACGAAGACTGCCAAATGGAGCCATCCGTCAAACTTGAAGACCAGAACCGAGACGCTGTCCTCCTAACCTTCCAAAACATTGTCAGCGATAACCTAATCACCGATAAGCTTCTTAAAACAGAAAAGATTAAGCTCGAACCACAAGGCGATAATCATTTCTGTGAAGTCTGTCATCTAGTCTTTGGATCAGCTAGAACTCTAATTACACACCAAAAAAGAGCACACAAACATTTTAGGAAGtcatttgtaaatatttgcGACGATTGCGGTATGTCATATGAGTTTAAGAACAGTTTAGTCGCTCATATTCGAAGAAAACACGGCCCTGGTGCTAATAAAGATGACATGTTGGAGCGTACATGTGATCTGTGTGCTTTAGTCTTTAAAGGCACGTCTCGCCTACGCATGCATATGAGAAGAAAGCATGGCTCTTACGAGGATACATTTAGTCATGAATGCGAGTACTGCGGTCTTACTTATGATAAACAATCGAGTCTGATTGTACATGTAAGAAGAAAACATACACACAAAGCCAAACCAAAATCTAACCTATGGTTGACTTGTCCGTTTTGTtcgaaaatatttacaaaaagagAGACTTATGCTCGACACATTCAGAGAAACCATCGAGTGAAGGATGATGAGGCGAAAGCTAAAGATGATGACGAAGAGTTCAAACAGATGTACATGAATGAAAAAACACGTGAATTAACATGCAGGCAATGCCCAGCTAGTTTTTCATCTGTCAGCTATCTTAAATGGCATATGAGGAGGAAACATAATGCTCTTATAGCCGACTTTAGACTTAAATGCAAGATCTGTAATCTTTCAtatgctaattctgaaagtCTTAAGCGACATGTTAGAAGAAAACATGACAAAGGGACTTTCTGTTATGAGTGCAACAAACAGTTTGCTGATAGAGAAACGTATTTGAATCATTCTCACTCTAAAGATGTTAAAGAATGTACTATTTGTGGGTTGATTTTTGCAAATCAAGGTGGGTTGGCTAAGCATTTGAGGTGCACTCATAAAATAGACAGTCCTAAAACAGTTTTCTGTCCGATTTGCAATCAAGGGTTCATTAACAAACGTCAGTTGAAGCCTCATTATAATCGTGTGCATTTGAAAGTGACTTACACGTGTAAGTTTTGTAACAAAGTATTTAAAACTAGAGAGTGTTATAGGAAGCATGTAACTTTCAAACATCCGTCGATTCCAACTGATGATAGTAAAATGCATCAATGCGAAAAGTGCCCTGAGAAGTTCAACGATGAATTTGAACTTTGTAAGCACAACAATTTGGTTCACGGAAACGTACTTCTTGTAGTTATTAAAAAGGAGGAAGATGACATCAAAAACGTattcaaatgtacaaaatgtacagATGTATTTGAAAATTGGGAATTGCTTCGCGCACATTTTGAGCAATTTCATCATATGACAGAGGAAGTCCAATGCCAAATTTGTGGAGATCTTATGAGCAGAGGAGAGTTACTTAAACACATAAAAGTGCATGACGAAATCGAGGTCAAATGCAGATTTTGTGAGTTTAAAAGCAAAAATCGACTGAGTATGACCCAGCACATGCTAAGACACACAAATGCCGCAACGATACGTTGCGATTATCCAAATTGTAGATATAAAACATTCTACGAAGAAGCCATGCTGAAACACAAGAAGCGACACCAAGAGCTTGGTGTTAAATTGCAGTGTGCGAGCTGTCCGTTCCAAACTATGAACAAATACATCTTAAAATATCATGAGGAGGCTCACGAAACTGGAAAAAAACGTTATAAATGTGATAAATGTGACTACGCCACTATACTTCCAGCGAATTTAGTCCAGCATAAGTATAAACATTCCACAGAGAAGAGGTTTAAGTGTGAGGTGTGCCCGTTTGCAACAAAGTATAATACATCTTTGCGTTTCCATGTTAAGAAGAAGCATTGTGATCTCCCGACTATTAGTTAG
Protein Sequence
MSLLTEGNIKVEKDERKDPTSFLPEEAMCYEIKKKKKKKKKKKQEDPFKDVEEKLLVNREPDITALDPDIGSLDPEVTIKVEDIEVALNVDDFDNDDGLLMESYNEDCQMEPSVKLEDQNRDAVLLTFQNIVSDNLITDKLLKTEKIKLEPQGDNHFCEVCHLVFGSARTLITHQKRAHKHFRKSFVNICDDCGMSYEFKNSLVAHIRRKHGPGANKDDMLERTCDLCALVFKGTSRLRMHMRRKHGSYEDTFSHECEYCGLTYDKQSSLIVHVRRKHTHKAKPKSNLWLTCPFCSKIFTKRETYARHIQRNHRVKDDEAKAKDDDEEFKQMYMNEKTRELTCRQCPASFSSVSYLKWHMRRKHNALIADFRLKCKICNLSYANSESLKRHVRRKHDKGTFCYECNKQFADRETYLNHSHSKDVKECTICGLIFANQGGLAKHLRCTHKIDSPKTVFCPICNQGFINKRQLKPHYNRVHLKVTYTCKFCNKVFKTRECYRKHVTFKHPSIPTDDSKMHQCEKCPEKFNDEFELCKHNNLVHGNVLLVVIKKEEDDIKNVFKCTKCTDVFENWELLRAHFEQFHHMTEEVQCQICGDLMSRGELLKHIKVHDEIEVKCRFCEFKSKNRLSMTQHMLRHTNAATIRCDYPNCRYKTFYEEAMLKHKKRHQELGVKLQCASCPFQTMNKYILKYHEEAHETGKKRYKCDKCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01100022;
90% Identity
iTF_01100022;
80% Identity
-