Echr027304.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595863.1:9334534-9337780[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.3 20 6.6 0.5 2 20 113 131 112 133 0.80 2 19 1.3 91 4.6 1.1 2 23 138 159 138 159 0.93 3 19 2.7 1.8e+02 3.6 0.5 3 23 166 187 165 187 0.94 4 19 0.0024 0.17 13.2 1.8 1 23 192 214 192 214 0.97 5 19 0.63 43 5.6 6.3 1 20 217 236 217 238 0.93 6 19 0.0014 0.098 13.9 0.3 1 23 250 273 250 273 0.93 7 19 0.00043 0.029 15.5 1.1 1 23 279 301 279 301 0.97 8 19 0.2 13 7.2 0.8 1 23 335 358 335 358 0.98 9 19 0.0018 0.12 13.6 0.3 3 23 368 389 367 389 0.96 10 19 0.0034 0.23 12.7 2.9 2 21 500 519 499 520 0.94 11 19 1.6 1.1e+02 4.3 0.0 3 23 527 548 525 548 0.91 12 19 0.7 47 5.4 0.1 1 23 553 576 553 576 0.92 13 19 7.6e-06 0.00051 21.1 0.9 2 23 582 603 581 603 0.96 14 19 0.46 31 6.0 1.8 3 20 608 625 606 627 0.92 15 19 2.1e-05 0.0014 19.7 2.4 1 23 653 676 653 676 0.95 16 19 0.00083 0.056 14.6 0.8 1 23 682 704 682 704 0.93 17 19 0.0038 0.26 12.6 0.2 1 23 710 732 710 732 0.98 18 19 0.011 0.78 11.1 0.1 1 23 738 761 738 761 0.94 19 19 0.00012 0.0084 17.3 0.7 1 23 767 790 767 790 0.94
Sequence Information
- Coding Sequence
- ATGATTTATTTAGTCGTGCGAATTCGATTCTGTCTGGTTGATGAAGACGCCACTCTCCCGCCCGGCCTCTGCTGCGCTTGCGCAGAAGACGTCGTAACCGCCGCTAAGTTTAAACTTCTATGCCAGAAGTCCGCTCAACGATGGAACGAAGCAATCATGTACCTCTCGAAAATTAACATTGAAAGCGAAGACAAAACCCTATTCTTTATTTGCGAGGAAAATGACATGATTGTATGTGAAAAAAGAGTTGAAACTGTAGAATCTGCAGTGACCACATTAGAATACTTGAAAAAAGCAGAGAGGAAGAAAAAGCCGAAACGAAAAGAGTTCGCTTGCGCTTGTCCGTATTGCGATAAACAGTTCCCGGCTTTAGATATTCTGAATGATCATCTGAAGCACGGGCAGAAGAGAGTATGCTGTGAATGTGGTTTGATTCTAGACAAGTCCAAGCTGTCTATGCATTTGCGCGATACACACGAAATAGAAAAAGTGGACTGTAAGATTTGTCACGACCTATTCAGCAGTTATGGCGACGCGAATTGGCATCTAATGCAATACCACGGTCCTAACTCCTTTACTTGTAAAAATTGCGGGTGCGGATACCGCAACGAGAGAGGGTTGAGAGCGCATTGGTACTCCCATTCTCTGTTCTGTTGCGTGACTTGCGGTCAAAGTTTCGAGAACAACCGGTGCTACCGTCATCACAAGACCATTTGCAAGTCTAAGCTCAAATCTGAGTTCAAAATTTTCGAATGCAACGATTGCGGGCTTCAATACGATAAAAAACCTTCCTTAAAAATACACATAGTCCAAAAACATTTGAACGTACTTCCTTTCGTTTGTCAAGCTTGCGGCAAACGTACTTCAACGCTAGCACATTTGAGATCACACGAGAAAGTCCACGATAAAGACAGAAAGACTTTGGTGTGTCATTGTGGAGCCAAATTCCGCACAGAGTTAGGACATCGTCTTCACATGAGAGTACACAGTGGTGTAAAACCGTACAAATGTGCTCAATGCGAGGATTCTTTTATATCGGCGTCTAGGCGTTTAGATCACATGAAAAGGCGGCATAAGAGTACGAAGGATATGGCGCACGGGTGCGAACAATGCCCCGCTCGGTTCATCAGGCCTTGGGAGCTAAAGAAGCATTATATGCACTGGCACTGCTCATTCGTAAAGGAAGAGAGCGCATGTCCTCGCGGCGTATGCGTCGCGTGCGCAAGCGCCGCGCTCTCCGCACAGGAGTTCTGTCTGTTCGTGCAGAACGCACAGAAGATGTGGCTCAAAGCACTCGCCAACCTCGTAAACATACCCTTGGAGTACACGGAAAATGCCAAATCCATCTGCGCTTTCATTTCCCAAAACGACGTCACAATGGAGATCTACAAAGACTTTGCCGGCGGCGAGCCGGGAACGGTCGTGAACAGGTCCAAatcaaaaattatcaaaaagtaCGATAGGAAACCGAGAGTCGTTCGGAACGGTCCGATGACTTCATGTCCGGACTGTTGCAAGTGCTTCAGCAGCCCTTATTTACTGCAAATGCATCTGCGGAACAGCGATCGGAAAGACGCCTGTCCGATATGCGGGGTCGTCCTACTTAGGGGCGCCGAATTCAAAAAGCATTTAGAGATCGTTCACAAAGAAAGCCCATTTTTATGCAAAGAATGCTCGGCTGTGCTCATCACGGAGGCTGACTTTAATGAACACGAAAAAAACGCTCATAAAGAAGGCGCTCTCACTTGCAACGCCTGCGGTCGGACTTTCACGAGACAGTCCTCCTTCGCCAACCACTTACAGATGCACTTGGTACTCGCCTGCAGACGTTGCGGCTCCCAGTTCACAAACAGGAGCTGCTACCGCGAGCATAGGTCGCTCTGCGAACCGAACGCCAAACCGCTCTCTAAAACCGTGCCTCGCAACCAACGATCTAACATCCGCGACCCGGGACATTACGTCTGCGACTACTGCCAGAAGAGTTACACTTCTCGGTGTCAGTTGAAGAACCACATCCTCTGGATCCACCTGGACCATCGGCCGCATCAGTGCTCTTGGTGCGGGAAGAGGTTCTACACAGCAGCGAGGCTGAATGAACACTCCGTCGTCCATACGCGCGTCAGGAATTTCGAATGCGACATTTGTGGCTTAAAATTAGTGTCTAAAAGTGCAGCTATCTACCACAGGAGACGGCACACGGGGGAGAAGCCCTACGTTTGCGATGATTGTGGTGCTGCCTTCATCTCTTCGTCGCGACGTTTGGAACATGCGAAGAGGAAACATAACAAAGGTATCAGGTTCCAGTGCACGCTTTGCCCCGCCAGCTTTGTAAGGAaaagggaacttgaaaaacataGTGAAAAAAATCATAAACGAACGGTTATTCTTACGTGTGTTGATTGA
- Protein Sequence
- MIYLVVRIRFCLVDEDATLPPGLCCACAEDVVTAAKFKLLCQKSAQRWNEAIMYLSKINIESEDKTLFFICEENDMIVCEKRVETVESAVTTLEYLKKAERKKKPKRKEFACACPYCDKQFPALDILNDHLKHGQKRVCCECGLILDKSKLSMHLRDTHEIEKVDCKICHDLFSSYGDANWHLMQYHGPNSFTCKNCGCGYRNERGLRAHWYSHSLFCCVTCGQSFENNRCYRHHKTICKSKLKSEFKIFECNDCGLQYDKKPSLKIHIVQKHLNVLPFVCQACGKRTSTLAHLRSHEKVHDKDRKTLVCHCGAKFRTELGHRLHMRVHSGVKPYKCAQCEDSFISASRRLDHMKRRHKSTKDMAHGCEQCPARFIRPWELKKHYMHWHCSFVKEESACPRGVCVACASAALSAQEFCLFVQNAQKMWLKALANLVNIPLEYTENAKSICAFISQNDVTMEIYKDFAGGEPGTVVNRSKSKIIKKYDRKPRVVRNGPMTSCPDCCKCFSSPYLLQMHLRNSDRKDACPICGVVLLRGAEFKKHLEIVHKESPFLCKECSAVLITEADFNEHEKNAHKEGALTCNACGRTFTRQSSFANHLQMHLVLACRRCGSQFTNRSCYREHRSLCEPNAKPLSKTVPRNQRSNIRDPGHYVCDYCQKSYTSRCQLKNHILWIHLDHRPHQCSWCGKRFYTAARLNEHSVVHTRVRNFECDICGLKLVSKSAAIYHRRRHTGEKPYVCDDCGAAFISSSRRLEHAKRKHNKGIRFQCTLCPASFVRKRELEKHSEKNHKRTVILTCVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -