Echr026714.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595863.1:3560641-3573510[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00046 0.031 15.5 0.2 1 23 31 54 31 54 0.95 2 19 0.011 0.73 11.2 0.5 2 23 77 99 76 99 0.94 3 19 0.015 1 10.7 2.3 2 23 122 144 121 144 0.95 4 19 0.0001 0.0071 17.5 0.8 1 23 148 170 148 170 0.97 5 19 0.2 13 7.2 1.0 1 23 175 198 175 198 0.90 6 19 0.13 9 7.7 0.2 2 23 206 228 206 228 0.89 7 19 0.019 1.3 10.3 0.7 1 23 235 258 235 258 0.96 8 19 0.00065 0.044 15.0 0.1 1 23 264 288 264 288 0.98 9 19 4.6e-05 0.0031 18.6 0.7 1 23 294 316 294 316 0.97 10 19 7.7e-05 0.0052 17.9 0.2 1 23 322 345 322 345 0.97 11 19 3.6 2.4e+02 3.2 0.6 10 23 398 412 389 412 0.86 12 19 0.36 25 6.3 0.1 2 23 440 462 439 462 0.95 13 19 0.014 0.96 10.8 1.5 3 23 483 503 482 503 0.97 14 19 0.006 0.41 12.0 0.1 1 23 507 529 507 529 0.98 15 19 0.03 2 9.7 0.5 1 23 534 557 534 557 0.90 16 19 2.2 1.5e+02 3.9 1.0 2 23 564 586 563 586 0.91 17 19 0.01 0.68 11.2 2.0 2 23 594 616 593 616 0.96 18 19 0.0015 0.1 13.8 1.7 1 23 620 642 620 642 0.95 19 19 0.0011 0.074 14.3 2.0 1 23 648 671 648 671 0.97
Sequence Information
- Coding Sequence
- ATGCTGCTCCTAACGAAGCATAGACAGAACATACACTCGGTGCTCGCATACTCCAACGCCACGCCCATCCGTGGCTACTGGGGCGTGGGATACGCCTGTGTTTTCTGTCCCCAACAATATGCGGACGCTTCAAACCTTAAAAAGCACACGCTATCCCAACACATCACCGAAAACTATAAAGTCAAACATTTGAGAACGCACTTAGTGAAATTAGACATTACTGGGTTAAAATGCGAAGTGTGCAACACTAAATTTGATAAATTGGAAACATTTATGCTTCACTTAAAAGCTGTACATGACAAGCCGATGCATTTCGATATCAAAAACCATATCGTACCGTACAAGTTCGAAAATAACATACTTCAATGCGTCAAATGCTGGAAACATTTCAACAATTTCAAAAACATATCTGAACATATGAATAATGAACATTTTAGGAATTTTGAATGCGATAAATGTACACGTGGCTTTGTTAACAAAAGCACTCTTATTACTCACGGTTCGCGGCATAGGACGGGCGAGTTTGCATGTCTTTACTGTAAGAAAATATTCAATACACGTCTGAGGAAAACGGAGCACGAACGAATCATACATTTCCACAATAGCAAGACCAGAAAATGCGGTTATTGCAGCGAGAAATTCGTTGACGTCTCGCAAAAGATTAAACACGAAGTTGTTATTCATAAAATGAAGCAACCCGAATTTCAGTGCTATAGCTGTGACAGAAAATTTGCCAGTCAGCGTATTCTACAAGGTCACATTAAGAACGTGCATTTAATGCATCGACCTTATAAGTGCACGGTAATTGGATGTGATAAGGCGTATTTCGTAAACGCCGAGCTAACAGCGCATTTATTTACACACGGTGACATTAAGCCCTTTGCATGTGCGCTATGCCCGAAGAGTTATAAATCTAAAAAGGCACTAAGTGCGCACATGCACATCCATGATGAGAGGAGGGATTATGAATGCGGGATGTGCAGCAAACGTTTCGTGGTTAAAGAGAATTTAGAGTTGCATTTGGAGAAAGTACACTATATTCAAAAAGaaaacgCAGACGCCCTCTTATTTCCAAGCAGTCACACGAGCCAGTTCCTGAAAGAGATCAAGACGCTACTCACATACTTCACCGCGACTCCCTTCCGTACGCGCGCGCACCGACCGCACTGCTTCTACTGCGTTCAACCGGATTTCACGACTGCCGAGGAGCTCAGACTGCACACGCAGTCTCAGCACCCTGACCTTATCCACCGTCTGGAGATCCTCATGAGACCGTCGTGGAACAACGAGATGATCAAACTGGACATACAGAATATATCATGCAGAGTATGCAACACCAGGTTTCTACAGTGGGCGGATGTTCTAGAACACTTAAAAATAATTCACAAGATCACGTtccaatataaaaacaaaatgatacCATATTTTTTGGACAACGACAGATACTGTGCTATCTGTCATGAGAAGTTTACGGCTTTTACGTTGTTGGAAACACATTTGAACAAACATTACAGGAACTACACGTGCGAGTATTGCGGTGATCCGTTTATAACTGCGTTACGTCTTAAAGCGCACGAAAAAATTCACGATACCGGTCGTTTTGCATGTGTGTATTGCAGCAAAGTGTTCTCGCTAGAGATATACATGAAGAAACACGTTTCTTTTGTACACTCCAATGAGTTAAAAGTGAAGTGTCGCTACTGTAGTGACGTGTTTAAAAATGACCATCAAAGACAAGCACATGTAGTGGTATCTCATGTGGAGCGTTTAGAATCGATTACTTGTGAGTTATGCGGTACAATGTTCAGTTGGATGCGACATTTTGTGCGGCACATGAAGAGGACGCATGGCACGGAACATAGATGCAATCAATGCGGTACGTTCTTTGCTTCGGAGAAGCTTTTGAAGGAACACGAGGTAAGACACACTGGTGTTAAAAAGTACAAATGTCTTGTTTGTTTTAAGAGTTATTTTTCACTGCCCAGTTTGAAATCTCACATGAAGTATTTGCATAAACGTCTAACAgaattactttaa
- Protein Sequence
- MLLLTKHRQNIHSVLAYSNATPIRGYWGVGYACVFCPQQYADASNLKKHTLSQHITENYKVKHLRTHLVKLDITGLKCEVCNTKFDKLETFMLHLKAVHDKPMHFDIKNHIVPYKFENNILQCVKCWKHFNNFKNISEHMNNEHFRNFECDKCTRGFVNKSTLITHGSRHRTGEFACLYCKKIFNTRLRKTEHERIIHFHNSKTRKCGYCSEKFVDVSQKIKHEVVIHKMKQPEFQCYSCDRKFASQRILQGHIKNVHLMHRPYKCTVIGCDKAYFVNAELTAHLFTHGDIKPFACALCPKSYKSKKALSAHMHIHDERRDYECGMCSKRFVVKENLELHLEKVHYIQKENADALLFPSSHTSQFLKEIKTLLTYFTATPFRTRAHRPHCFYCVQPDFTTAEELRLHTQSQHPDLIHRLEILMRPSWNNEMIKLDIQNISCRVCNTRFLQWADVLEHLKIIHKITFQYKNKMIPYFLDNDRYCAICHEKFTAFTLLETHLNKHYRNYTCEYCGDPFITALRLKAHEKIHDTGRFACVYCSKVFSLEIYMKKHVSFVHSNELKVKCRYCSDVFKNDHQRQAHVVVSHVERLESITCELCGTMFSWMRHFVRHMKRTHGTEHRCNQCGTFFASEKLLKEHEVRHTGVKKYKCLVCFKSYFSLPSLKSHMKYLHKRLTELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -