Echr026652.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- ZNF532
- Assembly
- GCA_951392215.1
- Location
- OX595863.1:3084820-3088814[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0014 0.093 14.0 1.1 1 23 31 54 31 54 0.94 2 13 0.15 9.9 7.6 0.3 2 23 82 104 81 104 0.93 3 13 0.0011 0.074 14.3 0.6 2 23 129 150 128 150 0.96 4 13 0.00016 0.011 16.9 1.0 3 23 156 177 154 177 0.93 5 13 0.0003 0.02 16.1 0.9 1 23 253 276 253 276 0.94 6 13 0.012 0.81 11.0 0.5 2 23 303 325 302 325 0.94 7 13 0.031 2.1 9.7 1.2 2 23 348 369 347 369 0.96 8 13 0.00026 0.017 16.3 0.8 1 23 373 395 373 396 0.93 9 13 0.00064 0.043 15.0 1.2 1 23 415 438 415 438 0.96 10 13 7.4e-06 0.0005 21.1 0.6 2 23 446 468 445 468 0.95 11 13 3.8e-05 0.0026 18.9 1.7 1 23 474 496 474 496 0.98 12 13 0.0001 0.0069 17.5 0.8 1 23 502 524 502 524 0.97 13 13 8.7e-05 0.0059 17.7 0.5 1 23 530 553 530 553 0.97
Sequence Information
- Coding Sequence
- ATGTCATCGGCGCAAAGAAAAGTTCACGGTATCAAGCAAGTGCTGCTCTGTTCGACTGCAACACCAATATGGTCGCATTCTGACATCGGGTACAAGTGCTCCTACTGCGAGCTCAAGTACCCCCGACTCGACAGACTCAAGAAGCACACACTGGAGGAACATGATGAGGTCACAGAAGCTCGGTACCTCAAATCTCATTATTTCAACCACGATATTGTTATTAAACTGGACATAACGTCATTGAGTTGTAAACTTTGCAGCGGGAACTTTGACAATTTAAAAACCCTAATTGAACACCTGAACGATACTCACAAGAAACGTATTGACGCTGACGCAGAAATTACAAGCCACTTCTTTCCATTTAGATTCCACTCGGAAACACTCTATTGTGGGCTATGCTCAAACACATATACCTCATTCGAAGACTTGAAGCAACACATGAAAGTGCATCTGAAGATTTCTAATTGCAATATTTGCGATGAAGGATTTACTAGTCAAAGAATGCTTAAAGCGCACCATAACGCTACTCATACACTAAACTATAATCCagcgaaaaaaaacaaaaacaaggaCCCCGGCAGGCGTTACTTTTGTCAAGAGTGCAGTATTCCCGTACAAGAACAAGTGCCAACAAGTGCAGCTACCTCGGTCGATCAAATCTCTGAACTAACACCAAGGCAAAGAAAAATACGAGACATGAAGCAAGTACTGCTCTGGTCGACTGCAACACCAATACGGTCGCATTCTGACTTCGGGTACAAGTGCTCCTACTGCGAGATGAAATACCCCCGACCAGACAGACTCAAGAAGCATACACTGGAGGAGCATGACGAGGTCACAGAAGCGCGGTTCCTTAAAACTTACTATTTCATCGACATTTTCGTCAAGCTGGACTTAACAGCATTGTGTTGTAAACTTTGCCGTGGGAGTTTCGTCAATTTAGACACTCTTATAGCGCACCTTAACTTGATTCACAAGAAGCGTATTGAAGCAAGCATTGCTAATAACTTCCTTCCATTAAAATTCTACTCTGACACACTGCATTGTGGGATGTGCTCTAACACATATCCCACATTCAAAAGTCTCGAGCAACATCTGAATGTGCACATGAAGATTTATAAATGCAAGATCTGTGATGAAATTTTTACAGGGAAAGGAATGCTTCAAATTCACGATAATACTCatcataaaatacataatacgCCGAAAAAGACGATTAAAACAAAAGCCTCCAACTGGCTTCACGTGTGTCAGGAGTGTGGTGAGAGATTCCCCACTAGATACACTAAGACGGTCCATGCTAGGAAAGTGCACAAAGGGCCATCGACTTACCTCAATTGCAACGCTTGTGACAGAGTCTTCGAAAGGAAAGAACAATTGAGGAACCATATTAGAAGAGATCATATGATGGAAAGGCGTTTTCAATGCAGCGTTTGTAGTAAggcattttttaacaatagtttTCTGTTAAAGCATGAGATGACGCATTCGAGTGAGATGAAATACTCTTGTAATGTCTGCGGGAAGAGGTTTAAGTTCAAAACGTCTCTAGGACCTCACATGCAGATTCATAGCGGAGTTCGGAGGTTCAAGTGTGAGCTGTGCGAACAGACTTTCGTACAGAAAGGTTCTTGGAAGGGACATATGCGGGCCAGGCATGGTGTTATTGAGTAA
- Protein Sequence
- MSSAQRKVHGIKQVLLCSTATPIWSHSDIGYKCSYCELKYPRLDRLKKHTLEEHDEVTEARYLKSHYFNHDIVIKLDITSLSCKLCSGNFDNLKTLIEHLNDTHKKRIDADAEITSHFFPFRFHSETLYCGLCSNTYTSFEDLKQHMKVHLKISNCNICDEGFTSQRMLKAHHNATHTLNYNPAKKNKNKDPGRRYFCQECSIPVQEQVPTSAATSVDQISELTPRQRKIRDMKQVLLWSTATPIRSHSDFGYKCSYCEMKYPRPDRLKKHTLEEHDEVTEARFLKTYYFIDIFVKLDLTALCCKLCRGSFVNLDTLIAHLNLIHKKRIEASIANNFLPLKFYSDTLHCGMCSNTYPTFKSLEQHLNVHMKIYKCKICDEIFTGKGMLQIHDNTHHKIHNTPKKTIKTKASNWLHVCQECGERFPTRYTKTVHARKVHKGPSTYLNCNACDRVFERKEQLRNHIRRDHMMERRFQCSVCSKAFFNNSFLLKHEMTHSSEMKYSCNVCGKRFKFKTSLGPHMQIHSGVRRFKCELCEQTFVQKGSWKGHMRARHGVIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -