Echr025111.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595860.1:11375226-11379898[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.8 1.3e+02 4.1 0.3 6 21 246 261 245 262 0.93 2 16 0.0017 0.12 13.6 0.3 1 23 268 290 268 290 0.94 3 16 0.76 52 5.3 0.4 3 12 322 331 322 336 0.87 4 16 0.23 16 7.0 0.0 3 20 334 353 332 354 0.90 5 16 0.0029 0.2 12.9 0.2 1 23 355 378 355 378 0.96 6 16 0.0079 0.54 11.6 5.6 1 23 384 406 384 406 0.98 7 16 1.9e-05 0.0013 19.8 0.8 1 23 411 433 411 433 0.97 8 16 2.7e-05 0.0018 19.3 2.3 1 23 439 461 439 461 0.97 9 16 3.5e-05 0.0024 19.0 2.0 1 23 474 496 474 496 0.98 10 16 0.0012 0.085 14.1 5.3 2 23 500 521 499 521 0.96 11 16 5e-05 0.0034 18.5 0.8 1 21 527 547 527 548 0.94 12 16 7.5e-07 5.1e-05 24.2 1.2 1 23 566 588 566 588 0.98 13 16 2.9e-07 2e-05 25.5 0.6 1 23 594 616 594 616 0.97 14 16 2.7e-06 0.00018 22.5 1.2 1 23 621 643 621 643 0.97 15 16 9.9e-05 0.0067 17.6 0.3 1 23 648 670 648 670 0.98 16 16 6.6e-05 0.0044 18.1 0.9 1 23 676 699 676 699 0.96
Sequence Information
- Coding Sequence
- ATGCATGCAATCGGCGACACTCCATACCAGGAAATGTTTGAGAAACTTACGGGTACTCAGTTGGTGATGGGATCCGGCCGCCCCGACACGGTATGCTACATGTGCGCCTCGCAGCTGCAGAGATTTCGTAGATTCTTTACAAGGGCATGTAACGCAGAGAAAAATCTAACGACACATCTTCAACATGGAATCCAGCTAACGCATGAGAGTGTGGCCTCACTGGACCGAGGAAGCTTATGGTACTGCTCCGCGAGCATTGTGCGGTTCATGACCGTACCGGACACCTTGCGGATCACGTCCGAACCGGATTCTGTGCGGGTCACATCCGAACCGGACTCTGTGGTCCAGTTAAATGTGAAACAGGAACCATTCCATGACGAGACTGTCAAAGAAGAATTGCCAGATTTGGTGAAGAGTGAACTCTTAGAAGATGGAATCAAAGacGCGACGTTGTGTATCGGCGCCCTCAAGCCAGATCCCGACGGTGAGACTCATCCGTCCCATCACAACCGCGCGGAGACGCTCGCCCCGGATCATAACCGCGCGGAGACTCTAGCCCCGGATCTCGACCGCGCGGAGACCCTAGCGCCGACCGATATCAACACGGGCTGCTCTCGTGAACTCTCGCTAACATTAAACCCAACGACTCATCTGAACAAACTCCCTGCACACAGTAGCTTGACTAACATGTATCTAAAGAGGCAATTGCTAacacctaaaaaaaaaacattcgcaTGTAATAACATATTTAGTTCAGCAACATGTTTAAAATCACATCTAAAAAGTCAAGCAGGAGGCTCGTTCGCTTGCGACAATTGTGATGTCAGGTTCAGAAACGAATTGAGTTTACGGAGACACAAAGCGGCTCATACTAGACACAAGGCGACTCACACTAGACACAAGGCGACTCACACTAGACACAAAGTGACTCATACTAAACATGCTGCGGGGAAGTCGGCTGGGTGCGACATGTGTCATAAAACATTTTCTCCGAGTACATGTAGACGTAACATATGCGATGAAACACTGACCCAAAATGGTGCACTTGTGGAGCACATGGACTTCGTTTGCGCTGTCTGCAGTAACAAATTTGACACAGAAACCAATCTAATAAAGCATGTTGAAAGAGTCCATACCAGAAAACAGCCTCATTCATGCAACATGTGCAATATAACATTCGATTGCAAGAGTTCACTCACAATACACACGAGAACTCACACGGTGAGACCGTTTGCGTGCGGAAAGTGCCCCAAAACGTTCACTCGCAAAGCTTCTTTAGACAGCCACAAAAAAATACACACTGCAGTGAAGTCGTTTGCTTGTAATAAATGTAATCAAACATTCTTCAACAATAATACTTTAGAAAAACATATAAAATCTCATAACATAGGGCTTGAGAGTGCTAAGCGAGAAAAGACACACAAATGCGATGAATGCGGTCAGATATTTACAAACAGAAACACTTTAAGATTGCACAGAGAGATGCATATTGGATTGACGTGTGATATATGCAAACGTGCGTTCAAGAGGAAACATAACCTGAGATGTCATATGGTAATGCATACGGGAGAAAAACCGCACGCATGTGAAACTTGCGGCAAAGCGTTCTACGACAAGTTCaagttaaaaaaacatataaaagcGTTTTTAGGCAAAGAACACGTTAATCGCGAGAGACATCATGTAGCGCACGAGTACACATGCGATGTTTGCAATCACACGTTCAATCAAAAAAGTAATCTAATAAATCATATTATAGTTCACACGGGTGAAAAGCTGTTCGTTTGCGACCGGTGCGGGAAAAAGTTCGCTAATACAAGCAACTTGCAGAAACATATGATATGGCATAAAGGCGAACAACACCCGTGCGATCGCTGCGATAAGATATTCCGATCTAAAGCTTATTTAAAGATTCACATTAGAATTCACACCGGGGAATTGTTCTCGTGCGAAGTGTGCAGTCGGAAGTTCAAGCGAGGCGCTGATCTGCGGATACACGCGCGTGTTCACACGGGTGAGAAGCCGTTCGCGTGTGACGCGTGTGGCAAGGCGTTTAGTAGACCGTGCAAACTCAAATCACATGTCAAAAGCGTTCACAGGGATCGGAGATGA
- Protein Sequence
- MHAIGDTPYQEMFEKLTGTQLVMGSGRPDTVCYMCASQLQRFRRFFTRACNAEKNLTTHLQHGIQLTHESVASLDRGSLWYCSASIVRFMTVPDTLRITSEPDSVRVTSEPDSVVQLNVKQEPFHDETVKEELPDLVKSELLEDGIKDATLCIGALKPDPDGETHPSHHNRAETLAPDHNRAETLAPDLDRAETLAPTDINTGCSRELSLTLNPTTHLNKLPAHSSLTNMYLKRQLLTPKKKTFACNNIFSSATCLKSHLKSQAGGSFACDNCDVRFRNELSLRRHKAAHTRHKATHTRHKATHTRHKVTHTKHAAGKSAGCDMCHKTFSPSTCRRNICDETLTQNGALVEHMDFVCAVCSNKFDTETNLIKHVERVHTRKQPHSCNMCNITFDCKSSLTIHTRTHTVRPFACGKCPKTFTRKASLDSHKKIHTAVKSFACNKCNQTFFNNNTLEKHIKSHNIGLESAKREKTHKCDECGQIFTNRNTLRLHREMHIGLTCDICKRAFKRKHNLRCHMVMHTGEKPHACETCGKAFYDKFKLKKHIKAFLGKEHVNRERHHVAHEYTCDVCNHTFNQKSNLINHIIVHTGEKLFVCDRCGKKFANTSNLQKHMIWHKGEQHPCDRCDKIFRSKAYLKIHIRIHTGELFSCEVCSRKFKRGADLRIHARVHTGEKPFACDACGKAFSRPCKLKSHVKSVHRDRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -