Echr012489.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595846.1:2283958-2288447[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00025 0.017 16.3 0.6 1 23 14 36 14 36 0.95 2 24 1.4 95 4.5 0.4 1 23 64 86 64 86 0.88 3 24 2.1e-05 0.0014 19.7 1.4 1 23 108 130 108 130 0.98 4 24 0.17 12 7.4 0.8 5 23 138 157 135 157 0.93 5 24 9e-05 0.0061 17.7 1.1 1 23 221 243 221 243 0.99 6 24 0.016 1.1 10.6 0.9 1 23 249 271 249 271 0.96 7 24 0.054 3.6 9.0 0.4 2 23 280 301 279 301 0.97 8 24 9.8e-05 0.0066 17.6 0.6 1 23 327 349 327 349 0.98 9 24 0.013 0.91 10.8 0.9 1 23 355 377 355 377 0.98 10 24 0.21 15 7.1 0.1 2 23 386 407 385 407 0.96 11 24 0.00071 0.048 14.9 2.4 1 23 413 435 413 435 0.97 12 24 7.2e-06 0.00049 21.1 0.3 1 23 441 463 441 463 0.98 13 24 6e-08 4.1e-06 27.7 0.9 1 23 469 491 469 491 0.98 14 24 0.00068 0.046 14.9 1.5 1 23 497 519 497 519 0.98 15 24 0.0027 0.18 13.1 4.3 1 23 524 547 524 547 0.98 16 24 8.9e-05 0.0061 17.7 3.8 1 23 552 575 552 575 0.98 17 24 0.2 13 7.2 9.3 1 23 581 604 581 604 0.96 18 24 0.0023 0.16 13.2 0.2 2 21 609 628 609 629 0.93 19 24 0.00029 0.019 16.1 3.9 2 23 630 651 629 651 0.98 20 24 0.0015 0.099 13.9 1.6 2 23 658 680 657 680 0.92 21 24 0.027 1.9 9.9 0.6 3 20 685 702 683 706 0.93 22 24 0.17 11 7.4 0.5 2 21 711 730 710 731 0.92 23 24 1.3 89 4.6 0.3 3 21 740 757 738 760 0.72 24 24 0.49 34 5.9 2.8 2 23 766 788 765 788 0.95
Sequence Information
- Coding Sequence
- ATGGAAGGCTTCATTGTGCGATTGGATAAGATAAAAGTACACCAATGTGACAAATGCCCGAGGGTGTTCATCAACAATGAAGGTCTCCGAGATCATAATGCACGGCATGATGTGCAGGAGCAGCTGTCTCGGGCAAGAGTTATGAAGcatATAATGAGTGTCAAAGTTTTACTAAATCGTACCCAGATATACCAATGTAGGGAGTGCACAAGAGGCTTCTTGCTATATGTTCCCCTCAATGAACATCAGAAAGAACATTCCAGAGAAACAAAGTCAATAACACAATTTCCACATGAGAGCAATAACAATTACTTGAAGCCTCATAAATGTGAAGAGTGTGGCCTCAGGTTTGTGGAAAGATCCACTCTCACCACCCACTTGAAAGTCCATGAACCATTCCATCACGTCTGCCACTGCGGCATAGGGTTCTACCAGGCAAAAGACCTCGCCACCCATGGAAGACTTGTCCACCCAACACACCAAATGAAGATAGAATCCACTGAAACTAAAATCAAATCGGAATTTGCTGTCCAACCAAAGAAAAAACGAGCCAAATTAAGAGCAAAACCCAGACTTCTAGCAAAGATAGTATTTTCTAAGCCTAAAGTTAAATCAAGAAGTAGAGAAATGGTTTTGATTCCCAAAAACGAAGATGGTGACTATGAATGTTATCTATGTGGACAGGCTTACACAGATAAGACCACATTTTTTGATCACATTAAAACGCACAAGGGCATGTGGCATCATTTCTGTGATAAATGTCCCTACAGGTCTCCCACTCTAGCAACTCTAATAGCGCATACAAAGTCACATGATCCCAGCCGCAATGGACAATGGCAGTGTGACATATGCAAAAGTAATTTAAAGAACCAAAGATCATTAGCATATCACACAATGATCCACACGGGGGAAAATTATGCATCTAAGAAGAGAAAtgataaagaaaatattatgttttgcaAAAACAAAGATGATAATTATGAGTGTTCATTGTGTGGACAGATTTACAAAGATAAAACTACATATTTTGCTCACATCAACTCTCACACGGGCCAGTGGCATCATGTGTGTGACAAATGCCCATTTGGTTCCAAAACTCTTGCAACTTTGATAGtccataaaaaaacacatcaaGCCGATCACAATGGAATTTGGAAGTGTGACACATGCCAAGCGATTCTCAAGAGCAAAAATGGTTTAATATATCACACATTGGTGCACACTGGTGAAAAACAATTTGCATGCACTCTTTGCACCAAAAGTTTCACACAACCTGGGGCTTTAAAGTGTCACTTGAAGAGACATACAGACACCCGCCTTTTCGAATGCGATCTTTGTAAGAGACGTTTCGTAGATAAAGGAGCTTTATCTCTGCATATCCGCACGCACACCGGTTTGAAGCCGTACAGTTGCAAGGATTGCGGGAAACAGTTCTCTGATCCATCGGCTTTTAATCGACACCGGCGAATCCACACCGGGGAGAAACCGTACCGTTGCAAATACTGCCCCAAGGCGTTCAGCGACATCAGCGCTCACATCGTTCATACGCGTCGCCACGAGGGGGTCACATACACCTGTGAGATCTGTCGAAAACAACTGTGCAACCACAGTGGCTTGTATAACCACATGAAAAGCGTCCacgaaaataatgtttttgaatGCGACTATTGCGGAATGAAAACAAATCACAAGCATAATCTTATGATGCATATCAAAACTGTTCACTTTAAAGTGAAAAGATATAAGTGTAGCTACTGTCAGAAGCAATTTTACCATAGACATAATCACAAGAGCCACATCCAACTTGTTCACGAAACAGGGAATGTTTGTCCAATTTGCGATCGGTTGTTCAAAACTGAAGGTGAATTAGTGAAGCACAAATGCGTTAAATGTACCATTTgcgataaacattttaaaagtaatttagATATGAAAACCCATCTCAAACGTCATTCCAATAGGAAAGAACTTAGGTGCCCGGAATGCCCGAAGAAGTTTTTTGATATAACCGCACTGAACAAGCATCGTTCTGAATGCCATGGTATAGTAGCTTGCGATCATTGCGGGGAGAAATACGATGGCAAACGAAAATTGACAAATCATATCTGGTCCAAGCATATGTTGAGTTTGTATTGCGACGTGTGCATGAGACGTTTTTACACAGAATCTGCATTCAGAAATCATAAAATGAGGAAGGCTTGCGAAAGAAGAGTTGCATGCaaaatttgtaaatttaaatttagacaatcTATTATTGTGCGTCATCTGATGATAAGTCATCTGAATATGAGATTGAAATGTGTCACTTGTGGGATGAAATTTAGGTGCAAGGAGAGATTGATACAGCATTTCAGATCGGCTCATGGAGCAGGTCTGGGTTTGAATCCTGCCACGGCGAAGGAAAACAACGTAAGGAACCAGCATATCCTAGAACGAAATATTGGAAGACACGAGGTCTCCGCCCCTCTCCCCCGTCCGTACTATCTGACCACTAAACCTCAACTCACCGGTGGTAAGTTGGCACTCTGA
- Protein Sequence
- MEGFIVRLDKIKVHQCDKCPRVFINNEGLRDHNARHDVQEQLSRARVMKHIMSVKVLLNRTQIYQCRECTRGFLLYVPLNEHQKEHSRETKSITQFPHESNNNYLKPHKCEECGLRFVERSTLTTHLKVHEPFHHVCHCGIGFYQAKDLATHGRLVHPTHQMKIESTETKIKSEFAVQPKKKRAKLRAKPRLLAKIVFSKPKVKSRSREMVLIPKNEDGDYECYLCGQAYTDKTTFFDHIKTHKGMWHHFCDKCPYRSPTLATLIAHTKSHDPSRNGQWQCDICKSNLKNQRSLAYHTMIHTGENYASKKRNDKENIMFCKNKDDNYECSLCGQIYKDKTTYFAHINSHTGQWHHVCDKCPFGSKTLATLIVHKKTHQADHNGIWKCDTCQAILKSKNGLIYHTLVHTGEKQFACTLCTKSFTQPGALKCHLKRHTDTRLFECDLCKRRFVDKGALSLHIRTHTGLKPYSCKDCGKQFSDPSAFNRHRRIHTGEKPYRCKYCPKAFSDISAHIVHTRRHEGVTYTCEICRKQLCNHSGLYNHMKSVHENNVFECDYCGMKTNHKHNLMMHIKTVHFKVKRYKCSYCQKQFYHRHNHKSHIQLVHETGNVCPICDRLFKTEGELVKHKCVKCTICDKHFKSNLDMKTHLKRHSNRKELRCPECPKKFFDITALNKHRSECHGIVACDHCGEKYDGKRKLTNHIWSKHMLSLYCDVCMRRFYTESAFRNHKMRKACERRVACKICKFKFRQSIIVRHLMISHLNMRLKCVTCGMKFRCKERLIQHFRSAHGAGLGLNPATAKENNVRNQHILERNIGRHEVSAPLPRPYYLTTKPQLTGGKLAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -