Echr024313.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- Sall1
- Assembly
- GCA_951392215.1
- Location
- OX595860.1:2225658-2227415[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.002 0.13 13.5 0.4 1 23 90 112 90 112 0.98 2 16 9e-05 0.0061 17.7 2.4 1 22 118 139 118 139 0.95 3 16 0.0015 0.1 13.8 4.1 1 23 162 184 162 184 0.97 4 16 8.1e-06 0.00055 21.0 4.9 1 22 190 211 190 211 0.97 5 16 4.1e-05 0.0028 18.8 3.0 1 23 234 256 234 256 0.98 6 16 1.2e-06 8.4e-05 23.5 0.9 1 21 262 282 262 283 0.96 7 16 0.04 2.7 9.4 2.5 1 23 294 316 294 316 0.97 8 16 1.2e-06 8e-05 23.6 1.2 1 21 322 342 322 343 0.96 9 16 5.7e-05 0.0039 18.3 2.4 3 23 353 374 351 374 0.95 10 16 0.00052 0.035 15.3 4.7 1 23 380 402 380 402 0.98 11 16 6.8e-07 4.6e-05 24.4 1.1 1 23 408 430 408 430 0.97 12 16 2.7e-05 0.0018 19.3 0.1 1 23 436 458 436 458 0.98 13 16 1.2e-06 8.4e-05 23.6 2.4 1 23 464 487 464 487 0.97 14 16 4.1e-06 0.00028 21.9 0.3 1 23 493 515 493 515 0.97 15 16 3e-05 0.0021 19.2 0.3 1 23 521 543 521 543 0.98 16 16 3.6e-05 0.0024 18.9 0.8 1 21 549 569 549 570 0.95
Sequence Information
- Coding Sequence
- ATGGCTCCTGCACATTCCATATCAATAGATGATGACTATGCAAACAATGAATGCAATCAACAGCCACCGTCTGTCCCTATGGGAAACAACTACGATAGCGATTCAGTAACAGttaaaaaagaagtaaaaaaagaaactgttTCTGAAGATGAAGATGTAGTTAAAACTGAGAAGAATACAGAAGATGTTGAAATGGATAAtgattcaaataataaatattctattatCAAAGGCGAGACAAGCAATCCCAATGACACGCTGTCCTGTTTCAGTTGTGATGTGTGTAGCAAAAACATTGGCACAAGAAGCCTCCTGAAGTCACATTTGATAAGTCAttctggagaaaagccatatacttGTGAGAAGTGCAACAAATTATTCTCTAGGAAACATAATATGGTACAGCATATGACAACTTGCACTAATTTAGAACAGTCCCAAATCAAAAGTGATGCAAGCAATCCTGATGACATGGGTTCATATTTCTGTTGCGATGTGTGCAGCAAAAAATTTGGCACAATACACCTTCTAAAGTCACATATGATAAGTCAttctggagaaaagccatatacttGTAAGAAATGCAAAAAAACATTCTCTAGAAAACATAATATGGTGCAGCACATGAAAACTTGCAACTATATAGAACAGTTCCAAACCAATAGTGATACTAACAATCCTGATGACATGAGTTTGTATTTTCATTGTGATGTGTGCAGAAAAAAATTTGCCACAAAATATCTCCTGAACTCACACTTAATAACTCATTCCAGTGAAAAGCCATATACATGTGAGGGGTGTGAGAAATCATTCTCCAGGAAGCAAAATATGAAACAGCACATGAAGATTTGTACTGAAGTCAAGCCTTGTACCCAAACATTCCCCTGCTCGTTTTGTACACAGACATTTGACTGTGAAAGTGATCTTACTAATCACGTGACAACCCACTCGGAAGATAAGCCTTATACCTGTGAGAAATGCAATAAATCGTTCTCTACAAAACCAAACATGAAACAGCATATGAAAATTTGCTTCTTAGAAAACGAGTCTGTTAATTGTACCCTTTGTACCCAAACATTTACCAGTAGAAGCGATCTATGTAAGCACTTGAACGTAGACCATACGGAAGAAAAGCCATATATCTGTGACAGATGTAGTACCAAATTCTGGCATAAAAGTCATTTAAAAGCGCATATGAGAATTCACACTGGGGAAAAACCATTCGCCTGCGAAATATGCGGTAAAACATTCACCTTAAgaaaccatttaaaagcgcaTATGGGAACCCACACAGGAGAAAAACCATATGCCTGCGAAATATGCGGTAAAGCATTCCTTGCAAATGGCAATCTTCGAGAACACATGCGAAGTCACACCGGCGAGAAGCCGTATGCATGCAAAACGTGCGGGAAGACTTTCGGGCATCAGAGCACTTTGAGACAACATGTCCGCAGAGTTCATTTGGAAGCTAAGGCGTTTGCTTGCAACAGATGTTCTCTGTCATTTACTCAGGAAAGTGGTTTGACTGCACATATGCGAATCCATACAGCGGAGAGGCCATATGCCTGTGACATATgtgataaaacattttttgaagCTCGTTATTTGAAAGGGCACATGCAAGTCCACTCTGAAGAAAGACCGCATACCTGTAACGCTTGTGGAAAGGCATATAAACGACCGGAACACTTGAAACTGCATATCAAATCTAAATGCAAAGCCACTTTTGCCATACCGGGCTTTGACttgcaaacataa
- Protein Sequence
- MAPAHSISIDDDYANNECNQQPPSVPMGNNYDSDSVTVKKEVKKETVSEDEDVVKTEKNTEDVEMDNDSNNKYSIIKGETSNPNDTLSCFSCDVCSKNIGTRSLLKSHLISHSGEKPYTCEKCNKLFSRKHNMVQHMTTCTNLEQSQIKSDASNPDDMGSYFCCDVCSKKFGTIHLLKSHMISHSGEKPYTCKKCKKTFSRKHNMVQHMKTCNYIEQFQTNSDTNNPDDMSLYFHCDVCRKKFATKYLLNSHLITHSSEKPYTCEGCEKSFSRKQNMKQHMKICTEVKPCTQTFPCSFCTQTFDCESDLTNHVTTHSEDKPYTCEKCNKSFSTKPNMKQHMKICFLENESVNCTLCTQTFTSRSDLCKHLNVDHTEEKPYICDRCSTKFWHKSHLKAHMRIHTGEKPFACEICGKTFTLRNHLKAHMGTHTGEKPYACEICGKAFLANGNLREHMRSHTGEKPYACKTCGKTFGHQSTLRQHVRRVHLEAKAFACNRCSLSFTQESGLTAHMRIHTAERPYACDICDKTFFEARYLKGHMQVHSEERPHTCNACGKAYKRPEHLKLHIKSKCKATFAIPGFDLQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -