Basic Information

Insect: Epirrita christyi
Gene Symbol: -
Assembly: GCA_951392215.1
Location: OX595857.1:2867461-2869371[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.6e-05 0.0025 18.9 1.5 1 23 213 235 213 235 0.97

2 14 6e-06 0.0004 21.4 4.7 1 23 241 263 241 263 0.98

3 14 1.1e-06 7.2e-05 23.8 3.6 1 23 269 291 269 291 0.98

4 14 2.6e-07 1.7e-05 25.7 0.4 1 23 297 319 297 319 0.97

5 14 3.6e-05 0.0025 18.9 0.2 3 23 327 347 325 347 0.98

6 14 2.7e-06 0.00018 22.5 2.1 1 23 353 375 353 375 0.98

7 14 1.6e-06 0.00011 23.2 0.5 1 23 381 403 381 403 0.99

8 14 6.5e-07 4.4e-05 24.4 0.9 1 23 409 431 409 431 0.98

9 14 2.3e-06 0.00016 22.7 0.2 1 23 437 459 437 459 0.98

10 14 0.01 0.7 11.2 1.8 1 23 465 487 465 487 0.98

11 14 4.7e-08 3.2e-06 28.0 1.2 1 23 493 515 493 515 0.98

12 14 2.2e-06 0.00015 22.8 1.4 1 23 521 543 521 543 0.98

13 14 6e-06 0.00041 21.4 0.8 1 23 549 571 549 571 0.98

14 14 9.1e-06 0.00062 20.8 1.3 1 22 577 598 577 598 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.6e-05	0.0025	18.9	1.5	1	23	213	235	213	235	0.97
2	14	6e-06	0.0004	21.4	4.7	1	23	241	263	241	263	0.98
3	14	1.1e-06	7.2e-05	23.8	3.6	1	23	269	291	269	291	0.98
4	14	2.6e-07	1.7e-05	25.7	0.4	1	23	297	319	297	319	0.97
5	14	3.6e-05	0.0025	18.9	0.2	3	23	327	347	325	347	0.98
6	14	2.7e-06	0.00018	22.5	2.1	1	23	353	375	353	375	0.98
7	14	1.6e-06	0.00011	23.2	0.5	1	23	381	403	381	403	0.99
8	14	6.5e-07	4.4e-05	24.4	0.9	1	23	409	431	409	431	0.98
9	14	2.3e-06	0.00016	22.7	0.2	1	23	437	459	437	459	0.98
10	14	0.01	0.7	11.2	1.8	1	23	465	487	465	487	0.98
11	14	4.7e-08	3.2e-06	28.0	1.2	1	23	493	515	493	515	0.98
12	14	2.2e-06	0.00015	22.8	1.4	1	23	521	543	521	543	0.98
13	14	6e-06	0.00041	21.4	0.8	1	23	549	571	549	571	0.98
14	14	9.1e-06	0.00062	20.8	1.3	1	22	577	598	577	598	0.96

Sequence Information

Coding Sequence: ATGTCTCAAAAagctgaaaaaaatattgtggaTCAAGTTACCAGTGAACGGGAGGTAGTACAAAACCCAAATACCGATGATCATTTTAATGATGAAATTACTCAAATATCTGTGAAGAAAGAGTATATTGAAGTTGAGATACCTACACTTAATGAAGACACcaattttgtatgtttaaaTAACCATTCAAATTATGAAAGTATTCAAATATCCGTGAAGGAGGAAATCAATGAAGTTGACGAAGAAATCAATGAAGTTGAGGAAGAAATCGGTCATGACCATTCAAACTATGAAAGTATTCAAATATCCATGAAGAAAGAAATCAATGAAGTTGACGAAGAAATCAGTCATGACCATTCAAACTATGAAAGTATTCAAATATACATGAAGAAAGAAATCAATGAAGTTGTGGATGAAATTAGTGATAACCGTTCAAATTATGGAAGTACTCAAATATCAGGGAAAAAAGAAATCAATGAAGTTGTGGAAGAAATCAGTAAAGTTGAGGAAGACCGCACTGAAGTTGAGGAAGAATTCAATGAAGTTGATCCAAGTACACTAGTTGAAATTGAAATAGATGAAACGTTAGAGAAAAGTGAAAACTCTCAAACGAAGAAACTCACTGGAGTAAAACCATATACCTGCAttcaatgcaataagacattcccCTCAAATAGTCCATTTCAAACACACATGAGAacccacactggagaaaagccatttgCCTGCAATCAATGCGATAAGTTATTCTCCCGTAACTGTCATTTGCAAGCACACATAAGAACTCACACCGGGGAAAAGCCGTATGCCTGCAATCAATGCAATAAGTTATTCACACGTAACTATCATTTGCAAAAACACATAAGAATCCACAACGGAGAAAAGCCATTTGCCTGCAACCAATGTGATAAATCATTCTCTGACAGTGGCGGTTTGCAAAAACACCTGAAAGTCCATACTGGAATAAAACTGTATGGCTGTAATCAATGTGATAAATCGTTCACTGAAGGTGGTGGCTTACAAAGACACCTGAGGGTCCACTCCGGAGTAAAGCCATATGCGTGCAAACAATGTGATAAGACATACTCTAATAGCCATGGTTTGAAGGACCACCTAAGAGTACATACAGGAGTAAAGCCATATGTTTGCAAAGAATgcgataaaaaatatgcatCAAGTAATGGTTTAAAAAACCATTTAAGAGTTCACACTGGAGTAAAGCTGTATATCTGCAATCAATGTAATAAGTCATTCTCTTCTGGCAGCAATTTGCAATCACATTTGAAAATACATACAAGAGTGAAACTGTATGCTTGCACCCAGTGTGTTAAGTCATTCCCTGACAATGATGGTTTGCAAAGGCACCTCAGAGTACAcgctggagaaaagccatacaCCTGCAACCAATGCGATAACTCATACTCTTGCAGTGTTGGCTTGCAAAACCACATGACAGTACACACCGGAGAAAAGTCATATATCTGCAATGAATGTAACAAAGCATTCTCttctaaaaataatttgaaatctCATATGAAAATCCACtccggagaaaagccatatattTGCAATGTATGCAATAGGACATTTGCTCATAGCAGTACTTTGTATGTGCATCTAAGAGTCCACAGTGGAGAAAAGCCATTTGTCTGTAATCGATGCAATAACATGTTCTCTTCTAACGCCCAATTGCAAAACCACATGATAACGCACACTGGAATAAAGCCATTTTACTGCCCAAAATGCAATAAGTTGTTTGCTCGTCAAAGCAGTTTGAAATACCATATAAGAAAGGCAGTATGCAtgtaa
Protein Sequence: MSQKAEKNIVDQVTSEREVVQNPNTDDHFNDEITQISVKKEYIEVEIPTLNEDTNFVCLNNHSNYESIQISVKEEINEVDEEINEVEEEIGHDHSNYESIQISMKKEINEVDEEISHDHSNYESIQIYMKKEINEVVDEISDNRSNYGSTQISGKKEINEVVEEISKVEEDRTEVEEEFNEVDPSTLVEIEIDETLEKSENSQTKKLTGVKPYTCIQCNKTFPSNSPFQTHMRTHTGEKPFACNQCDKLFSRNCHLQAHIRTHTGEKPYACNQCNKLFTRNYHLQKHIRIHNGEKPFACNQCDKSFSDSGGLQKHLKVHTGIKLYGCNQCDKSFTEGGGLQRHLRVHSGVKPYACKQCDKTYSNSHGLKDHLRVHTGVKPYVCKECDKKYASSNGLKNHLRVHTGVKLYICNQCNKSFSSGSNLQSHLKIHTRVKLYACTQCVKSFPDNDGLQRHLRVHAGEKPYTCNQCDNSYSCSVGLQNHMTVHTGEKSYICNECNKAFSSKNNLKSHMKIHSGEKPYICNVCNRTFAHSSTLYVHLRVHSGEKPFVCNRCNNMFSSNAQLQNHMITHTGIKPFYCPKCNKLFARQSSLKYHIRKAVCM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -