Echr008077.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595841.1:1641438-1641932[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-09 2.3e-06 27.9 0.0 2 38 15 51 14 58 0.90 2 2 9.7 1.2e+04 -3.1 0.0 17 21 148 152 138 153 0.51
Sequence Information
- Coding Sequence
- ATGGTTCGCAAGTATAAGAAAAAGAGAGAAACCATAGTCAATGAAGAGGATATTAAGAAGGCAATCGATTGTGTTCAAAATCAAACCATGACATTAAGAGGAGCTGCCGCTATATTTGGTATTACTAAAAGCACTCTAGGATACCGAATGAAACTATTAAAAAAcgatcaaaagtcaaaaagtgaAGACTTTTCCACCAAATATAGCGTCAATCAGATATttacaaaagaagaagaagttatgctgcaaaaatatatattaaaatcatCAAAGATGAATTATGGTTTAACCTACAATAAAACTAGGTTATTGGCGTACCAATATGCTAAGGCTTTAAAAAAATGTCCCGAGGCATGGGAACTGAATAAAATTGCTGGAATTGAGTGGTTGAAGGGTTTTATGGGGAGGCACAGAAGCCTATCCCTACGCAAACCTGAAAACACGAGTTTATCAAGAGCAACCAGCTTTAACCGCCACAACGTAATGGAGTTCTAA
- Protein Sequence
- MVRKYKKKRETIVNEEDIKKAIDCVQNQTMTLRGAAAIFGITKSTLGYRMKLLKNDQKSKSEDFSTKYSVNQIFTKEEEVMLQKYILKSSKMNYGLTYNKTRLLAYQYAKALKKCPEAWELNKIAGIEWLKGFMGRHRSLSLRKPENTSLSRATSFNRHNVMEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -