Echr015856.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595849.1:14213500-14214547[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-09 2.6e-06 27.8 0.0 1 40 19 58 19 61 0.92 2 2 2.1 2.6e+03 -1.0 0.0 13 22 140 150 136 150 0.66
Sequence Information
- Coding Sequence
- atgccccGTAAATACAAGCGTAAAGCCGGCGTCCAACCGCGTGTCATTACTTGGACCGAGGACACATTGGCTGCAGCTATAGCAGAAATGCAAGATGAACGACTTAGTGTGAATGATATAGCAAAAAAACACGGAATACCATCTAGAACGTTACGTCGCCGGTTTGCTACACAAAATCAGAAAATAATACCATTAGGAAAACATCCAACTCTTGGATTCGAAAATGAACGTCGGCTGGTCGCTCATATTCAGAGGCTAGAACGATCCGGGTTTCTTCCTGACAGAAAAACTGTTCGCGCCTTAGCTTATCAATTTGCAGAAAAGTTAAtgataaaacataattttaacacAGAGAAAAAATTGGCTGGAACTGATTGGCTTCAGAGCTTTTTAGAAAGGAACCTTATTTTATCTATTAGACAAGCTGAAGGTCTCTCAGTCTCACGTGCATTGGCTCTAAACAAGGAAGAAATCAATGGCTTCTATGACTTACTAACAAAAGTTCTAGAAGAAAATGACCTTTTGGACAAGCCAGATCGACTTTTTAACATGGACGAGACTGGAGTTCAAATGAACAACAAAGTAGGTAAAGTTCTAGCTACTAAAGGAACGAGATCTGTTCACTCTATAACTTCGGGTGAAAAAGGTGAAACACTGACGGTCGTAGCTTGCTGCAATGCAGTGGGTAATTTTCTCCCTCCAGTTGTGATAATCAAAGGAGTTCATAAAAAAGATGAATTTATGGACGGTCTACCTCCTGGTTCAAAAGtctttatgaataaaaaaatctgcCTATATCAATGCAGAGTTATTTCTAAAATGGCTGAGGGAGCATTTTATCCCAATGAAACCTCAGGGAAAAGTTTTGCTCATTTTGGACGGCCACAGCTCACATTCTTCTGCCGTTGA
- Protein Sequence
- MPRKYKRKAGVQPRVITWTEDTLAAAIAEMQDERLSVNDIAKKHGIPSRTLRRRFATQNQKIIPLGKHPTLGFENERRLVAHIQRLERSGFLPDRKTVRALAYQFAEKLMIKHNFNTEKKLAGTDWLQSFLERNLILSIRQAEGLSVSRALALNKEEINGFYDLLTKVLEENDLLDKPDRLFNMDETGVQMNNKVGKVLATKGTRSVHSITSGEKGETLTVVACCNAVGNFLPPVVIIKGVHKKDEFMDGLPPGSKVFMNKKICLYQCRVISKMAEGAFYPNETSGKSFAHFGRPQLTFFCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -