Echr023070.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595858.1:4358429-4359220[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-10 5.7e-07 29.9 0.0 1 41 14 54 14 57 0.89
Sequence Information
- Coding Sequence
- ATGTCGGAGTCAAAACCTAGAAAAAGAGGTAGTACATGGGATGAAGACAGTTTAAGACGTGCCATGGAAGCAGtacaaaataatcaacttaATACAAATGCTGCAGCGTTTAAGTTCAATATTCCAAGGCGCACCCTTAGAAACCATTTAGTAAGCGGTAacagtactaaaataattgggAAGACAACTATTctcacaaaacaattagaagaaGATTTATCGCAGCGAATCAAACGATTTGCAAAACTGGGCGTACCACTTACGTCTAAATTTATTAGGAAACaagcctttttattttttgagagGTTTAAAATCAAGCACTCATTCAATATGTCAACAAGAATGGCTGGACGCAAATGGCTTAAAATGTTTTTGGCTCGAAACCCATCAATATCAAAAAGAAAACCCCAGCTAATGAATCCAGCTAGAGCTCAAAAAATGAATAAGCCCATTGTGAAACACCATTTTGAAGAAGTGAAGAAACTCTATGAAGAGCTAGACATTATTGCACATCCAGAACGCTTGTATAACATGGATGAAAAAATGTGTCGCATTACGGTCCACAAACAAACTGTAGTTTTGGCTGAAAAAGGGAATACAAGAGTACATCTTGTTGCTCCGGAACACGCCGAGAACGTTACAATAGTGATGTGCGTAAATGCTGTGGGTATTGCTATACCGCCCATGATTCAAAGAAGAGCTTTCCTCGGGtcgccgaggactcccgggcaggcctgcgccggcattagtgagctgctggccttcctggaggacatcgggtggctggattag
- Protein Sequence
- MSESKPRKRGSTWDEDSLRRAMEAVQNNQLNTNAAAFKFNIPRRTLRNHLVSGNSTKIIGKTTILTKQLEEDLSQRIKRFAKLGVPLTSKFIRKQAFLFFERFKIKHSFNMSTRMAGRKWLKMFLARNPSISKRKPQLMNPARAQKMNKPIVKHHFEEVKKLYEELDIIAHPERLYNMDEKMCRITVHKQTVVLAEKGNTRVHLVAPEHAENVTIVMCVNAVGIAIPPMIQRRAFLGSPRTPGQACAGISELLAFLEDIGWLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367741;
- 90% Identity
- iTF_00662170;
- 80% Identity
- -