Basic Information

Gene Symbol
nfxl1
Assembly
GCA_951394285.1
Location
OX596158.1:7640011-7642491[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 2.5e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 19 0.014 1.8e+02 2.7 0.7 4 10 169 175 168 175 0.97
3 19 3.5e-06 0.043 14.3 14.6 3 19 186 202 185 202 0.94
4 19 1.1e-07 0.0014 19.1 11.8 3 19 239 255 237 255 0.91
5 19 1.7 2.1e+04 -3.9 1.4 14 18 272 277 272 278 0.59
6 19 1.6 2e+04 -3.8 1.0 6 10 280 284 279 284 0.89
7 19 3.2e-09 4e-05 24.0 13.1 1 19 290 308 290 308 0.99
8 19 4.6e-06 0.057 13.9 18.0 3 19 345 361 337 361 0.86
9 19 6e-06 0.075 13.5 18.3 1 18 395 412 395 413 0.97
10 19 2.4e-08 0.00029 21.2 16.9 1 19 422 440 422 440 0.99
11 19 0.0002 2.6 8.6 6.4 9 19 488 498 486 498 0.89
12 19 0.00073 9.1 6.9 7.0 1 12 507 517 507 517 0.96
13 19 0.35 4.4e+03 -1.7 3.3 14 18 546 550 546 551 0.85
14 19 0.24 3e+03 -1.2 0.4 8 12 567 571 566 578 0.79
15 19 1.9e-05 0.24 11.9 5.1 1 11 587 597 587 598 0.97
16 19 0.63 7.8e+03 -2.5 1.3 15 18 612 615 611 616 0.83
17 19 0.0018 22 5.7 12.8 4 18 629 644 627 645 0.85
18 19 2 2.5e+04 -6.5 3.4 9 13 651 655 651 655 0.71
19 19 6.8e-07 0.0084 16.6 12.4 1 18 686 704 686 705 0.87

Sequence Information

Coding Sequence
ATGGCACGTCGTTACAAAGATGCAGCCGCGAAGCTGCAACAAAACGTGCAGAAGCACCTCAAGGACATGAAGGATTTGTCTTCTTCCGAAGATGAGGAGCCCTACGAGTCCAGCGTCATCGAAGGAATGTTCCAGAGCTACTGGCGCGGAGGCGGAGACACCCAGATGTTGAATAGAACCAAGAATCTTCTCGAAGAAGCCATCAGTGGCCGGTCGGTAGCTTGTCTCATCTGCATCAGTTCCATTAAGCGGAACCACGCTGTGTGGACATGCGATCACTGCTACTCGTACTTCCATCTCTCCTGTATTCAAAAGTGGGCTAACGATAGTATAAACTTGCGCAGTATCGAGCCCCAGGCTTCGATAAGCGTTTACAAGCCTCAGAAAATTGAATGGTGCTGCCCAAAATGCCGTAATTCGTATAGCAAAGATGAAATCCCTAGGAAATACAGGTGTTTTTGTGGTAAAACTGATAATCCGCCTGTTCACCCCTGGCTTATACCTCATACATGCGGGGAGGTGTGTGAGAAGCGGCTGTCTACCGGAGATAACTGTAAACACTTATGTTTGCTTCTGTGCCACCCTGGCCCATGCCCCCCTTGTCCACAGACAGTAAACGGAATATGCTACTGTGAAAAGGAGCGTAAGAAAGTCAGATGCAGTTCAGCGAAATGGTCCTGTGGCCAGCAGTGTAAAAAAACCTTGCTATGTCAGACACATAAGTGTGAACTTTTATGCCATGAAGGAGATTGCTCGCCATGCACTTACACCAGCACCCAGCCTTGCCAATGTGGAGCTGAGAAGATTAAAAGACCCTGTGATGACCCCTGCTGGCATTGCAAGAAGACTTGCAACAAACCATTCTCCTGTGGATACCATAAATGTGAGAAAGTTTGTCACTCGGGTAGATGTGGAGATTGCCCCAACTCTGGCACGAGATCCTGTCCATGTGGAGCCAATCAGCGCTACGTCCAATGCCCTGACACCATGGAAACATGTCTGGGGACCTGCGGAAGAAAGCATGCTGACTGTGAACATAGCTGCCCAGAAAAATGCCATAAAGGCGCATGCCCACCTTGCCAAGTATTGATACAAAAGAAATGCCAATGCACCACACATACCAGATCCCTTCCTTGCAGTAAGGAGTTTAAGTGCGACACAAAATGTAGAGGTACTCGGCCTTGCGGTAAACATGGCTGTGCTAGAAAATGCTGCAATGGAAACTGCCCTCCATGTGAAAAGGCATGCGATAAGCCCTTACAGTGTGGCCGGCATAAATGCACTACAATCTGCCATCATGGGCCTTGCTACCCCTGCCCGATGGAATCCAAAATCAGCTGCAGATGTAAGGAAACTTATGTGACAGTTCCTTGTGGTAGAGAGAGGTTCACTAAACCTCCAAAATGCCTACTCCCATGCAAGCTGAAGTATAAATGTGGTCATGTGGATGAGAATAAACATTCCTGCCATTTCGGAGACTGTCCTCCATGCAAAGCAATCTGCTACAAAATCTATAAATGTGGCCATGAATGTAAAGCAATATGCCATGAGTACAAAGCTGTGGTCTTCAAACAGATTGAGAAACCTGCAACTCCTTGGGAAGTCCAGCCTCCGAAGACAAAGATCATGACTTTAGAATGCCCTCCATGTAACACCCCAGTCACTGTAATCTGTTTTGGAGAACATGAGACTGACAGCCAGCCATGTCACACTGCCTCTCGGAGACCATGTGGAAGGGAATGTGGAAAACCCTTGGCTTGTGGAAACCATAACTGTACTCTACTCTGTCACCTGTACAGCCCTGATCCGGACCACCCAAATGTACCCTTTAAATGCAAGCCCTGCAATCAAGAGTGTCTTAAGCCCCGTCCTGCAAAATGTGCACACAAGTGTTCCCTAAAAGCTTGTCATCCTGGACCTTGCTCTCAGTGTGAAGTCTTTGAACGCATTCCATGCCATTGCGGTGTAACCGAGCTGTACTTAAGATGTAAAGATAATAGCACTGCAACAGAAGAAATGTTGTCTTGCAAACAACAATGCCCAAAGAACTTAGGATGTGGACATCGCTGCAAAAATACCTGTCATTCTGGACCCTGTAGTAACCAAGTCTGTACAAAGAAAACTAAGATACACTGCCCCTGTGGGAATTTGAAAAAAGATGCTCCTTGTAATGCTGTTAAGAATGGAGAAGCCAAAGTCATGTGTGATGCATCctgtgaagaaaaaaagacaacAGCTAAGCTAGAAAGTGAAAAAGAACAACAGAGACTTAAGACGCTAGAAGAGGAAAGGAATAAGAAGGAATTGGCTGAATACGAGTGGAAACTGAGTGGGAAAAAGAAGAAATACAAAGAGAAGAAAGTTTTGATCAATAAGGATGAACGTAACTGGGTTCATCGACACTGGATGATAATTCTGGCTGTTTTATGTGCACTGCTGGCGgtagcttattttatttattcaattgaGACAGTAGTTTAA
Protein Sequence
MARRYKDAAAKLQQNVQKHLKDMKDLSSSEDEEPYESSVIEGMFQSYWRGGGDTQMLNRTKNLLEEAISGRSVACLICISSIKRNHAVWTCDHCYSYFHLSCIQKWANDSINLRSIEPQASISVYKPQKIEWCCPKCRNSYSKDEIPRKYRCFCGKTDNPPVHPWLIPHTCGEVCEKRLSTGDNCKHLCLLLCHPGPCPPCPQTVNGICYCEKERKKVRCSSAKWSCGQQCKKTLLCQTHKCELLCHEGDCSPCTYTSTQPCQCGAEKIKRPCDDPCWHCKKTCNKPFSCGYHKCEKVCHSGRCGDCPNSGTRSCPCGANQRYVQCPDTMETCLGTCGRKHADCEHSCPEKCHKGACPPCQVLIQKKCQCTTHTRSLPCSKEFKCDTKCRGTRPCGKHGCARKCCNGNCPPCEKACDKPLQCGRHKCTTICHHGPCYPCPMESKISCRCKETYVTVPCGRERFTKPPKCLLPCKLKYKCGHVDENKHSCHFGDCPPCKAICYKIYKCGHECKAICHEYKAVVFKQIEKPATPWEVQPPKTKIMTLECPPCNTPVTVICFGEHETDSQPCHTASRRPCGRECGKPLACGNHNCTLLCHLYSPDPDHPNVPFKCKPCNQECLKPRPAKCAHKCSLKACHPGPCSQCEVFERIPCHCGVTELYLRCKDNSTATEEMLSCKQQCPKNLGCGHRCKNTCHSGPCSNQVCTKKTKIHCPCGNLKKDAPCNAVKNGEAKVMCDASCEEKKTTAKLESEKEQQRLKTLEEERNKKELAEYEWKLSGKKKKYKEKKVLINKDERNWVHRHWMIILAVLCALLAVAYFIYSIETVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00857272;
90% Identity
iTF_00661917;
80% Identity
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