Etri000269.2
Basic Information
- Insect
- Epirrhoe tristata
- Gene Symbol
- Prdm15
- Assembly
- GCA_951394285.1
- Location
- OX596136.1:2769608-2776128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0063 0.43 11.6 0.1 1 23 190 213 190 213 0.94 2 9 0.0002 0.014 16.3 2.4 1 23 226 249 226 249 0.97 3 9 7.6e-06 0.00051 20.8 6.5 1 23 253 275 253 275 0.98 4 9 0.09 6 8.0 0.3 2 23 283 303 282 303 0.96 5 9 2.6 1.8e+02 3.4 0.5 1 21 309 329 309 334 0.88 6 9 0.00015 0.0097 16.8 2.0 1 23 342 365 342 365 0.92 7 9 0.00015 0.01 16.7 1.0 1 23 371 394 371 394 0.98 8 9 7.1e-06 0.00047 20.9 0.7 2 23 405 426 404 426 0.97 9 9 1.3e-05 0.00088 20.1 0.8 2 23 433 455 432 455 0.96
Sequence Information
- Coding Sequence
- ATGAGCGTAGTTAACTCGAGGCGAATATGCTGTACGTGCCTCTCTGGCAACCGAAAGTTGTTCCGACTATGTCGGGTGCCAGAAGGAGTGAATATCTTGTATATGTTACTTATGTGCGACTCGGAAGCCTACAGGGAAGGATTTTTTAAAGACACTGCCAGTTGGATGGTATGCTGGGAATGCCGTGCCATTGTCGAGAAAATAATGCAATTCCGCTCTCAAACCTGTCTGGCTCTGAAAAGCTTGAAGGATTATGCTGATGGAAGAAATACTCAGAGTGAATTACAAAGCCTGTCAAGATTATCAACATATAACCACACTGAAAGTTCTAATGAAATTGAGAGCAATATGTTTGTAGACTGCAatataaacacaaacaaactgaAGATTGAAGACATTCACTATAATAACAATGATATTGAAAATGTTACGTTTGATGAAATTGATTCagatatcataaaaatatctaaacaaaagtcaaaaactaaaaagtatacaTTAACCACTATGAATACTACAGAATTTAAGGCAGCAATGGATAAAAAAAGGTTGGAAATTAAAGATGTATTCAAATGTGAGTCTTGTGTACTTGGCTTTAAAGATGAAAGTGGTTTAAATTCACATGTGCTGGAAATTCATACTAAGAAAAAGAGCCAAATATCTGAACCATTCAAATATTCCTGTTCGGAATGTGACATGACTTTTAATAACAAAGGCGCAAAATGGAAGCATATACAAAAGTGTCACCGTGCCGGCCACAAATGTGACACATGCCAGAAAGTGTTCACATTTAAACACAACCTACAGCGGCATCAACTCATACACACTGGTACACACCCACGATCCCAATGCCCCCACTGCCTCAAACAAGTGCGAACTGCGCTGCTCGCTGCGCACGTCCGTATCCACTCGGAGCGCGCTCGCTTCGCTTGCGAGCCGTGCGGGAAGGGCTTTATATGCCGCGCCACTTACGAGAGCCATCTGAAGTACGCTACTGCGCACGCAGGCAATGACTCACTCAGACATTCGTGCAACTCGTGCGACAAGAGGTTCCGTTCACGCGGCGAGTTGCGTGACCACGTGGCGTACAGACACGAGGCACAGCCCACATACAAGTGTCCGGTATGCGATAagGCGTTAGCGACGCGTCGCTGTGTGACTCGCCACGTGAAACGTGCGCACGACGGCGTGCAGGAGCGAGTGAGAGACAAGATGTGCGACTATTGCGGTCTCGCTTTCAAGGATAAACAATCACTCTCCGAACACTTGCGTCGCCACACAGGCGCGCGGCCGCTTGTGTGCGCACTCTGCGGCCGCAGCTTCCGTCAGCGAGCCGCGCTCCACGCACACACGCGCCGCACGCACTGTATATAG
- Protein Sequence
- MSVVNSRRICCTCLSGNRKLFRLCRVPEGVNILYMLLMCDSEAYREGFFKDTASWMVCWECRAIVEKIMQFRSQTCLALKSLKDYADGRNTQSELQSLSRLSTYNHTESSNEIESNMFVDCNINTNKLKIEDIHYNNNDIENVTFDEIDSDIIKISKQKSKTKKYTLTTMNTTEFKAAMDKKRLEIKDVFKCESCVLGFKDESGLNSHVLEIHTKKKSQISEPFKYSCSECDMTFNNKGAKWKHIQKCHRAGHKCDTCQKVFTFKHNLQRHQLIHTGTHPRSQCPHCLKQVRTALLAAHVRIHSERARFACEPCGKGFICRATYESHLKYATAHAGNDSLRHSCNSCDKRFRSRGELRDHVAYRHEAQPTYKCPVCDKALATRRCVTRHVKRAHDGVQERVRDKMCDYCGLAFKDKQSLSEHLRRHTGARPLVCALCGRSFRQRAALHAHTRRTHCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00661638;
- 90% Identity
- -
- 80% Identity
- -