Etri022068.1
Basic Information
- Insect
- Epirrhoe tristata
- Gene Symbol
- -
- Assembly
- GCA_951394285.1
- Location
- OX596164.1:4053300-4057120[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00098 0.066 14.2 3.8 1 23 150 172 150 172 0.97 2 18 0.0039 0.26 12.3 0.3 2 23 197 219 196 219 0.94 3 18 0.076 5.1 8.2 0.4 2 23 240 262 239 262 0.93 4 18 0.036 2.4 9.2 1.0 3 23 270 290 269 290 0.92 5 18 0.79 53 5.0 3.5 2 23 296 317 295 317 0.95 6 18 0.065 4.4 8.4 0.4 2 23 322 344 321 344 0.95 7 18 0.0015 0.1 13.6 2.2 2 23 351 373 350 373 0.97 8 18 0.4 27 6.0 0.5 3 23 381 402 380 402 0.93 9 18 9.7 6.5e+02 1.6 3.9 1 23 453 476 453 476 0.91 10 18 0.027 1.8 9.6 1.7 2 23 502 524 501 524 0.89 11 18 2.3 1.6e+02 3.5 1.1 2 23 547 569 546 569 0.90 12 18 0.00027 0.018 15.9 0.1 1 23 576 599 576 599 0.95 13 18 0.0008 0.054 14.4 1.9 2 23 605 627 604 627 0.96 14 18 0.0028 0.19 12.7 0.1 2 23 633 655 632 655 0.95 15 18 0.0061 0.41 11.7 0.9 1 23 662 685 662 685 0.96 16 18 0.035 2.3 9.3 0.8 3 23 693 713 691 713 0.93 17 18 3.8e-05 0.0026 18.6 2.8 1 23 719 741 719 741 0.99 18 18 1e-05 0.00069 20.4 1.3 3 23 749 769 747 770 0.95
Sequence Information
- Coding Sequence
- ATGTTATGGGATTTTATTTCTGCATCCTTGTTACATTTTGAATCCTTAACCTCGCTCATAGTAGAGAAGAAACTGCAATATTACGAGGCCTCTGAATCAGCTGATTATAACGAAGAGTTGACACAGTCGACCATATACACTCGAGAATCACTCACAGATTCTGAGTGCAAAGAAGATATACTTTCTGAGTCGACTGGATACGAGCAAAATCCTATTGAATATATAGCTGAAACGCTTACAGAATCAACCGAGAAAGATACTGAGTACACTCAAGATATGCTCAAGGAATCTGCTCAAGAAATACTCGAGTCGCTAGAGAACAGAGATAATTCAGATTCAGAGGAAACGAGTGACAAACCGTCGGAAAACCTAGAGAAATTGAGAACAAATGTGAGGATCGTTGTGCAAGCGTCATCGGTTATGCCATTTCGGTGGTTAGTGTCAGCGTATAGATGTTTTTACTGCTACGAAGTTTTCCACCATCCGGACGAGCTCAAATCACATCAAATACTCCACGATGATACAGAAATCGTGAATGCAATGAACAAATTTTGGGATTCGTCTATTTACATCGATATATCATTTCTAAATTGCAAATTATGTACAAAAACGCTAAGTTCTTTAGACAGTTTGATAGATCATTTGATTGTAAAGCATAAAATACCGTATTATAAAGACGTTATCTGTTTCCAAGCTTTTAAATTAGGCGAAAACGTCTCTTGCGTAACATGTAATATGAAGTTTAGCGATTTTGTTAAACTACTCGTTCATACAACTTCGGAGCATCAACGCAGCGAGGATAAGCTTTGCGATGTCTGCGGAAGAACCTTCAAACCACACCAGATGAAAATGCACCTTGCTAATGAACATAGAAGCAAAACTGTCAAATGCACACATTGTAATCTAAACTTTAACGTGCACACAATAAGGACGCATATGATACGAGTACACAACAAGCTCTTGAAATGCCAAATGTGTTCGGAGACTTTTGAGACGGTTTACAAACGCGCTGCGCATCTCACAACTGTTCACAAACGAAGAGAACCTGTAAAATGTCCACATTGTCCCAATACTTATTACTTTCAAAGCACAATGCGAAGGCATGTTAAACGGGTCCATGTTAAGGAAAAGAATGTAGCCTGCGATCTGTGCGATTGGAAAGGCTTCAAAGCGTATGATTTGaaacaacattttttgaaaaagcATAAGATTTCAGAAATCGAGGACGCTTCTTCTCTGGTCAACTCAGTCATGGAGAAGATGACTGAGTTGCAACGCAAGGAGGACCTAGTAAGTCTCATGTCGACTATCATAGAGAATTCCACAGCCGTTCCGTTCCGTTGGCACTGCAGCAAATTCGCTTGTTTCTTCTGTTGCTACCCTTTCGAAGAGAGCTCGAAACTGAAAGCACATTACCACGAAGAGCACAGTGACGCAAAAATACGTAGCGCTTTCCGCGGAGTCATCAAAAACAGCAAAGTTAAACTTGAAATATCAAACCTAACCTGCAAGAAATGCTCAAAATGCTTCAATGTTATCGATGAACTCCTAGACCACTTTGTAAAGATCCACGGGTTGAAGTTGAACCTCGATGTGAAGCATCAAATCTTCGCTTACAAGCTCGCTGATGACAGAATGCCGTGTCTGCAATGTGGAGATGAATTCAGATTCTTTGGAACCCTACTCAAACACACTCACGCGAAACATAACACAACAAACGAAGCGTTCTTATGCGAGATTTGTGGACAAGCGTTTGTTACGAAGACGAGCGTAGCGAGCCACGTTAAAACTGTCCACACTAATGACGGCGTTTCGTGCGAAAAATGCAACATCTCTTTCAAAAACGTCAACGCGTTGCAGCTACATCATCGTCGCACACACAGAACTTATATGCTAAAATGCCCGAAGTGTCCCGAAGTCCTAACCAGTCCGTATTTGCGCAAACGGCATCTAGCTAAAGTCCACGACGTGAAACGCTTCCAATACGAATGCGACCTCTGCAACTTCGTGTTCACGTTGAAAAGCCGTCTTCTCATGCACAAATCCAGAGTGCACATGAAGGAAAGAGCGTTCGGCTGCGAGTTCTGCTCGTACAAAGCATTCAACAAGGAGAGTTTGACCCGTCACATGGTGTCGCATGACGACACCCGCCCATTTCAGTGTGAGTTTTGCAAGAAAGCGTTTCAGAGGAAGAAAACTTTGGAACTGCATAGGCGGATACATACAAATGATAGGCGGTATGGGTGTAAGGAATGCGGGAAGGCATTCGTGCAGTATACGAGCTTAAAACTGCATTATAGAGTACACCATTCGAAAGAGGGGCCGACAACTGAAGCGCACGTGGCCAGTTATTGGTCTCCTAGGCACTAG
- Protein Sequence
- MLWDFISASLLHFESLTSLIVEKKLQYYEASESADYNEELTQSTIYTRESLTDSECKEDILSESTGYEQNPIEYIAETLTESTEKDTEYTQDMLKESAQEILESLENRDNSDSEETSDKPSENLEKLRTNVRIVVQASSVMPFRWLVSAYRCFYCYEVFHHPDELKSHQILHDDTEIVNAMNKFWDSSIYIDISFLNCKLCTKTLSSLDSLIDHLIVKHKIPYYKDVICFQAFKLGENVSCVTCNMKFSDFVKLLVHTTSEHQRSEDKLCDVCGRTFKPHQMKMHLANEHRSKTVKCTHCNLNFNVHTIRTHMIRVHNKLLKCQMCSETFETVYKRAAHLTTVHKRREPVKCPHCPNTYYFQSTMRRHVKRVHVKEKNVACDLCDWKGFKAYDLKQHFLKKHKISEIEDASSLVNSVMEKMTELQRKEDLVSLMSTIIENSTAVPFRWHCSKFACFFCCYPFEESSKLKAHYHEEHSDAKIRSAFRGVIKNSKVKLEISNLTCKKCSKCFNVIDELLDHFVKIHGLKLNLDVKHQIFAYKLADDRMPCLQCGDEFRFFGTLLKHTHAKHNTTNEAFLCEICGQAFVTKTSVASHVKTVHTNDGVSCEKCNISFKNVNALQLHHRRTHRTYMLKCPKCPEVLTSPYLRKRHLAKVHDVKRFQYECDLCNFVFTLKSRLLMHKSRVHMKERAFGCEFCSYKAFNKESLTRHMVSHDDTRPFQCEFCKKAFQRKKTLELHRRIHTNDRRYGCKECGKAFVQYTSLKLHYRVHHSKEGPTTEAHVASYWSPRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -