Etri021672.1
Basic Information
- Insect
- Epirrhoe tristata
- Gene Symbol
- -
- Assembly
- GCA_951394285.1
- Location
- OX596164.1:1403560-1420470[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.45 31 5.8 0.0 3 23 173 193 171 193 0.95 2 13 0.00056 0.038 14.9 1.1 1 23 329 351 329 351 0.99 3 13 0.0062 0.42 11.6 1.2 1 23 357 380 357 380 0.95 4 13 0.014 0.96 10.5 5.0 1 23 385 408 385 408 0.93 5 13 4.9e-07 3.3e-05 24.5 2.3 2 23 550 571 550 571 0.97 6 13 0.00016 0.011 16.6 1.3 1 23 577 599 577 599 0.98 7 13 0.18 12 7.1 7.1 1 23 664 686 664 686 0.96 8 13 0.027 1.8 9.6 2.3 1 23 721 743 721 743 0.97 9 13 8.3e-06 0.00055 20.7 0.3 1 23 751 773 751 773 0.97 10 13 0.024 1.6 9.8 2.2 1 23 782 804 782 804 0.98 11 13 0.0001 0.007 17.2 0.9 3 23 855 875 854 875 0.98 12 13 0.011 0.71 10.9 5.6 1 23 892 914 892 914 0.97 13 13 0.0077 0.52 11.3 0.3 1 17 920 936 920 937 0.93
Sequence Information
- Coding Sequence
- ATGGATGTAGACCCACTAAGCTACGAGCAATACAGTACCTACCAACCTTACCTCCCCCAAACCAATATACCCCATTCCCAATCCAACTTACCTCACCCATCCAATATACCCCATTCTCAACCCAACATACCCCACTCGTCCAACATACCCCACTCGTCCAACATACCCCACTTGTCCAACATACCCCATTTGTCCAACATACCCCATACACCAAACCTACCTCCAAATCTATATCCATATAAAGACTACTACCCAAACTCATACAACCAAAACATATTAAGCAATGTACAAATAACGAGTCAGGATGGGCAAAATATTCAAACTGACTATAGTCAACTTAACGGGCAAACCGATGCAACTATATCCCAAAGCATTGATCAGGAGAATGTGGAAGAAGATATTAAGCCGGacatcaaaaaaatcaaaaggaTTCTTAAAAGAGCTCGGATACTTAAAGGCAAAACTAGTAGCTACTGGAATAAAAAGATTAAAGACaaggattttaagttctaCGGCTGTTCGATATGTAATATTGCCTTTCAAGAGCTAACGGAGCTCGATTCTCATGTCACGATACACAGTAATCGCATAACTAGCTATGATATACGAGTGCAGAACTTAAAGAAGAGGAAACGTCTTaagaaagagaagaagaagaagaaaaaagatGCCAAAGTTAAGAAAGAGTTAGATATTGATATTAAACCTGAAGATGGGTATATTGGTACGGAAACAGCAGCGGAATTCAATAGTGATTGTAAGAATGAGAAAAGTGATtgtaaaaatgataaaaatgagaAAATTGTTGATAAAAATCAGAAAAGCGATGAGAACAATGAAAAAAGTGATGATAAAAATGAGAAAAGTGATGATATAAATGAGAAATGTGATGACAATAAGAATGATGGGGCTATAAATGAGaaaaatgatgataaaaatgaaaatagtgATGTTAAAAAGACGGAAAACGGTAAAAATGAAGTATACAAGTGCTTTGCGTGTAACAAAGAGTTTGCGTTAAGTTACTATCTGAAGATACACGTCAGATCACATACagATGAGAAGCCCTATATCTGCAATTGTTGTGGCGAATCTTTTATAACAGCGAGCAAACTTGGCCGTCACAATAAAAGGATTCATCTGGCTATTAGACACCAATGCAGGATTTGCTTCCAATCTTTCAGCAGATTTGAGTTACTTACAAAGCATTTTGACAAGAAACATGCTGAGCATAAACTGGAAGGTGAACCTTATGATTACAACGCCATTCTACCCTACCTAACAGAACTAGAAGAGCAGTTTAAGATGGAAAACGATAAGAAACCTAAGACTGAAGAGCCTTGGGACGTTCCCATACAACAGGAATTTGAAAGCAAAGTGGAGGACactaagGTCACAACAAAATTCGAGTTTGCAGAGGACACCTACAAAGAGAAAGTAGAATTGGAGATCAAGTGTGAGCCAGAAGAAGAGTTGTGTGAGCCAGGACCTGACCCTGACTCTGATGATGGAGAGCATATGAAGGAGGAAAGacTACCCCCCACAGACGACGAGGAGGAATACTTCCCCCCTGACGGCTGGGCACGTTCTCCCCCTCCAGAATCCCCCCCTGCTCCCTCCCCCCCTAAAGGGGGCAAAGGGGCGGGGTCATGCGACCTTTGTAAGCGTAGCTTTAGCAGTAAAAGCTATCTTAAAGTGCATATGAGGACGCATACAGGTGAAAAGCCGTTTTCGTGCTACGTTTGCGGCCGTGGTTTTATAACAGCGAGCAAAATGCATCGCCACGTCTTAACTCACGATGACGCCTGGCTTGGTGAGGACGGAGTAAAACCAGAGGGTGCTAATATAAAATCTGAACCGGAAGACGAAGATGCATCTGAAAAGAAACCAAAAAGGTTAAAAAAGAAGATAGATAAGgcgaaaactaaaatattgaaGAAACCTTTTAAAAAGATGGATCCAGAGACCAAGAAAGGGCGCGTGAGGCCTCATTGCTGCGAATATTGTGGGAagaaATTCCTCCATATTGAAACGTTGCAAGTTCACAAGAAGTCACATGAAGGCGAAGAACTCATAATTAGATGCAACTTCTGTTTAGAACCACAGCTGGATTATGACGCGAAGACTGAGCATGAAGCAATTCACACAGGACCGAAGCCCTACCACTGCACACTTTGTGGAAGGAACTATAAGGAAAGAGGAGCTATGATATACCACAGAAAGAACCACAAGCCGAGCGACGAGAAACTGTTTATTTGTGATATTTGTTCTAAAAGATTCAACTCCCAGGCGAAGTTAGCGAGGCATATCGTTACGCACTCCAGTGAAAAATTCACGCTGCGTTACGAGTGTCCTGTCTGCGCGAATATGTTCCACACAAGGTGGCATGTACAGATGCATTTAAAGTCGCATCAGAAGGAAGGATTAATATTAGAAGAGAATCGCAACGCAGTGTTAGCTATGGTCCTGCAGAATGCGCGAAAGATCCCCAAGACCCCCTCGGCCCCCACGACGACCCCCACAAACACCCTCATACACCCCCCGGACGAGAGGTCCCGGATATGCAATATATGTGGACAGgtGTTCCAACATTTCTACTATTTAGAAGAGCATTTGAAAACACACGGGAACAAAATAGCAGTCGAAGACTTGgataaagaagaagaaaagaagTATACCTGCCAGgtttgCTCAAAATCATTCAAGCTACACTACTACTTAAAACTCCACAGCTTCACACACACAAAAGAGAAGCCATACATCTGCCAGCAGTGTGGCAAGGGCTTTATAACGAAGGGCAAGCTCAAGCACCAAGCTATTTAA
- Protein Sequence
- MDVDPLSYEQYSTYQPYLPQTNIPHSQSNLPHPSNIPHSQPNIPHSSNIPHSSNIPHLSNIPHLSNIPHTPNLPPNLYPYKDYYPNSYNQNILSNVQITSQDGQNIQTDYSQLNGQTDATISQSIDQENVEEDIKPDIKKIKRILKRARILKGKTSSYWNKKIKDKDFKFYGCSICNIAFQELTELDSHVTIHSNRITSYDIRVQNLKKRKRLKKEKKKKKKDAKVKKELDIDIKPEDGYIGTETAAEFNSDCKNEKSDCKNDKNEKIVDKNQKSDENNEKSDDKNEKSDDINEKCDDNKNDGAINEKNDDKNENSDVKKTENGKNEVYKCFACNKEFALSYYLKIHVRSHTDEKPYICNCCGESFITASKLGRHNKRIHLAIRHQCRICFQSFSRFELLTKHFDKKHAEHKLEGEPYDYNAILPYLTELEEQFKMENDKKPKTEEPWDVPIQQEFESKVEDTKVTTKFEFAEDTYKEKVELEIKCEPEEELCEPGPDPDSDDGEHMKEERLPPTDDEEEYFPPDGWARSPPPESPPAPSPPKGGKGAGSCDLCKRSFSSKSYLKVHMRTHTGEKPFSCYVCGRGFITASKMHRHVLTHDDAWLGEDGVKPEGANIKSEPEDEDASEKKPKRLKKKIDKAKTKILKKPFKKMDPETKKGRVRPHCCEYCGKKFLHIETLQVHKKSHEGEELIIRCNFCLEPQLDYDAKTEHEAIHTGPKPYHCTLCGRNYKERGAMIYHRKNHKPSDEKLFICDICSKRFNSQAKLARHIVTHSSEKFTLRYECPVCANMFHTRWHVQMHLKSHQKEGLILEENRNAVLAMVLQNARKIPKTPSAPTTTPTNTLIHPPDERSRICNICGQVFQHFYYLEEHLKTHGNKIAVEDLDKEEEKKYTCQVCSKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKHQAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00661562;
- 90% Identity
- -
- 80% Identity
- -