Etri015484.1
Basic Information
- Insect
- Epirrhoe tristata
- Gene Symbol
- -
- Assembly
- GCA_951394285.1
- Location
- OX596153.1:9885669-9887651[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.1e-05 0.0014 19.4 3.8 1 23 68 90 68 90 0.97 2 14 1.3 89 4.3 0.0 2 20 114 132 113 134 0.91 3 14 3.4e-07 2.3e-05 25.1 1.2 2 23 160 181 160 181 0.97 4 14 7e-05 0.0047 17.8 0.1 5 23 191 210 189 210 0.96 5 14 0.00079 0.053 14.5 0.7 1 23 216 238 216 238 0.95 6 14 0.00041 0.028 15.3 0.7 1 23 244 266 244 266 0.98 7 14 0.35 23 6.1 0.2 2 17 272 287 271 288 0.92 8 14 0.0031 0.21 12.6 0.3 1 23 392 414 392 414 0.98 9 14 0.0058 0.39 11.7 0.2 1 23 420 443 420 443 0.91 10 14 0.00016 0.011 16.6 1.0 3 23 451 471 450 471 0.97 11 14 4.8e-06 0.00032 21.4 0.4 1 23 477 499 477 499 0.99 12 14 0.0058 0.39 11.7 0.1 1 23 505 527 505 527 0.95 13 14 0.57 38 5.5 0.3 5 20 536 551 533 554 0.92 14 14 0.0044 0.3 12.1 0.2 1 23 560 583 560 583 0.95
Sequence Information
- Coding Sequence
- ATGGAGCTTGTCTGTCAAGCATGCCACTCAAAGACTTCCAGTGAGCAGTTCCACCAGCACTTGAGCTTGAATCATGGGGATGTTAAAAGTCGGGATGATATTGAAGAGTTTGTGAGAGAGCATGTCACTTTTGAGGAGACCCTGGAATCTGATGAAGATTGCTCTTCAGTCGGGTCCGCTGAAGCTTCTGTTGCGCGGCGTTTTGACTGTTCCATCTGTGACAAAGTATTTTCCACATGCCCTGAACTCTCCCACCACCTTAAAAAACATAACGCGAACGCCGATGGAATGTGCTGCGCTAAGGAAACTGAACAAGGCCTGAAGGCAGGGTCATCTTTGCGATGTAAAGGTTGCGACCACATCGCGGCAGATACAGATGCGTTGGCTACTCATAAAGCTCAGTGCGCTGCGTCTGACGTCACGGAGAAACGTCAGGTGGAAACGAGAGAGGAGACCAACCAGAAGCGGATTCCGGCCGTCTGCCCCGACTGCAACCGCACCTTCTCCAACAAATACAATATGCTGAACCATATGAAGAGTCACAGAGAAGAGACCGTGAAGTTTGACTGTGAATGTGGAAAGAGTTACTCGACTCGCGGGAATCTAGTAGCTCATAGACGGATAGCCCATGTCGGCGAGCTGTCCCATAGGTGTGAGGAGTGCGGCAAAGGTTTTCCGACTCGCTCAGCCCGTGACGTTCattctcgcttgcacaccgGGGTGCGGCCCTTTTCGTGTCCTGTCTGCGCGCGCTCCTTCCGCGCCAAGAACTATCTGGACAAGCATCGCGAGACGCACGCGCCGCGCCGTCTGCAGTGCGCGCTCTGCGGGAACAAGTTCCAGAGGCGAGCGCATCTCCGGTCCGCAGAGGGCTCGCCGGAGCGCGACTCGGACGGCTCGGAGCCGGCCCCCGCGCCCCTCGCCCCGCTCGCCGCGCTGCGCCGCGCGCTGCGCCGCCTGCGCGACCACTACGCCGCGCACCATCTGCCTCCGCCCTCGCCACCTCCACCCGCGCCTCCCGAAGCCCCCTCGCCCGCGGGGGACGAGCTCGATCTCGAGCGGTACGACGACCTGACGCGCGACAACATGCGGCGCGACCGCTTCGACCCGGAGACGCGACGCGCGCTCGCCTCGGCGCGCGAGTCCAGCTCGGGCAGCTCGGGCCGCGCGGTCTACCGCTGCGCTCGGTGCGGGCGCCGGCTCGCCTCCGCGCACGCGTTCGTGAACCACGCGCGCATCCACACCGGCGAGCGGCCGCACGTCTGCCACCGCTGCGGGGCCGCCTTCCGCGCGCCGCAGGGGCTCGCGCGGCACGTCGCCGAGACGCACgagcggcgccggcgccgcgcctGCCGCCTCTGCCGCGAGACCTTCGCGAACGAGCAGAACCTGCGCCAGCACCTGCGCAGGCACTCCGGCGAGCGCCCGTACCGCTGCGCGCTCTGCGACCGCACCTTCGCGCAGAGCGGCGCGCTGCACGCGCACGCGCGCACGCACCAGGAGGGCCGCGCGCACGCCTGCGCGCAGTGCGGGGCCGCCTTCCGTCTGCGCGCCGGGCTCGCGCGGCACGTCGCGCGCCACGCCGGCTCGCGGCCGCACCGCTGCGGCTGCGGGCGCGCGTTCGCCGCGCGGCACGAGCTCGCCGCGCATCTGCCGGCGCACGCGCCCGTCGCGCCGCACGCCTGCGCGCTCTGCGGCGCCGCCTTCCGGCTGCGGCGCGCGCTGCGGGACCACGCGCGCCGCGCGCACCCcgccgcgcccccgccgcccccgCTGACGCGCGCCTTCGTTGCAGGGACCGCGCCGAGCTAG
- Protein Sequence
- MELVCQACHSKTSSEQFHQHLSLNHGDVKSRDDIEEFVREHVTFEETLESDEDCSSVGSAEASVARRFDCSICDKVFSTCPELSHHLKKHNANADGMCCAKETEQGLKAGSSLRCKGCDHIAADTDALATHKAQCAASDVTEKRQVETREETNQKRIPAVCPDCNRTFSNKYNMLNHMKSHREETVKFDCECGKSYSTRGNLVAHRRIAHVGELSHRCEECGKGFPTRSARDVHSRLHTGVRPFSCPVCARSFRAKNYLDKHRETHAPRRLQCALCGNKFQRRAHLRSAEGSPERDSDGSEPAPAPLAPLAALRRALRRLRDHYAAHHLPPPSPPPPAPPEAPSPAGDELDLERYDDLTRDNMRRDRFDPETRRALASARESSSGSSGRAVYRCARCGRRLASAHAFVNHARIHTGERPHVCHRCGAAFRAPQGLARHVAETHERRRRRACRLCRETFANEQNLRQHLRRHSGERPYRCALCDRTFAQSGALHAHARTHQEGRAHACAQCGAAFRLRAGLARHVARHAGSRPHRCGCGRAFAARHELAAHLPAHAPVAPHACALCGAAFRLRRALRDHARRAHPAAPPPPPLTRAFVAGTAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -