Etri021580.1
Basic Information
- Insect
- Epirrhoe tristata
- Gene Symbol
- -
- Assembly
- GCA_951394285.1
- Location
- OX596164.1:249895-253272[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0024 0.16 12.9 2.2 2 21 111 130 110 131 0.93 2 18 0.016 1.1 10.4 0.1 2 23 136 157 136 157 0.96 3 18 9 6e+02 1.7 1.4 3 23 164 185 163 185 0.89 4 18 0.036 2.4 9.2 1.3 1 23 190 212 190 212 0.94 5 18 0.00051 0.034 15.1 2.3 1 22 215 236 215 236 0.95 6 18 0.00076 0.051 14.5 0.8 1 23 248 271 248 271 0.93 7 18 6.8e-05 0.0046 17.8 1.8 1 23 277 299 277 299 0.98 8 18 0.01 0.7 10.9 1.4 1 23 333 356 333 356 0.96 9 18 0.0019 0.12 13.3 0.6 3 23 366 387 365 387 0.96 10 18 0.00017 0.011 16.6 0.1 2 21 493 512 492 513 0.94 11 18 0.031 2.1 9.4 0.0 3 23 520 541 518 541 0.96 12 18 0.0014 0.097 13.6 0.2 2 23 574 595 573 595 0.96 13 18 0.0032 0.21 12.6 2.2 2 20 599 617 598 618 0.94 14 18 4.9e-06 0.00033 21.4 0.4 1 23 645 668 645 668 0.95 15 18 0.0002 0.013 16.3 1.4 1 23 674 696 674 696 0.96 16 18 0.0049 0.33 12.0 0.1 1 23 702 724 702 724 0.98 17 18 0.0094 0.63 11.1 0.1 1 23 730 753 730 753 0.94 18 18 0.0013 0.091 13.7 1.2 1 19 759 777 759 782 0.95
Sequence Information
- Coding Sequence
- atgCTTGTAACAAAAAAGGTTTTCTCTTATAACCTTGTTGATGAAGACCCCATCCTGCCTCCAGGGCTGTGCCGTGCTTGCGCGGATGACGTGATCACATCCGCCAAGTTCAAGCACCTTTGCAACAAATCCGCTCAGCGCTGGAACGAGGCAGCCGGCAACTTCTCCAAACTAGACCTGGAATGCGAAGACAAAACCATCTTCTTCATGTGCGCGGATAACGACATAGTCGTGTGCGAGAACAGGACGGAGTCAGTTGAATCGGCTGCTACACTCCTCTCCAAGTACAAGAAAGCTAAGAAAAGAGCGAGACGCAAAGAGTTTGCGTGTTGCTGTCCATATTGCGGCAAGCAGTTTGTTACAGTGGATCTCTTCAACGATCATCTAAAGCTTGGAAAGAAGAGAGTGTGCCGTGAATGCGGATTAGTTCTCAGCAAGTCTGAACTGGCAACACATTTAAGGGTGGTACATCAGAAGGAGTATAGAGACTGCAATATCTGCCACGATCTGTTCCGAAGCAACAGTGACGTTAACTTTCATATGACGCAACTCCACGGCCCGAACTCTCACAATTGTCAGGCCTGTGGGCGCGGGTATAGAAACGAGCGAGGCTTGAGAGCTCATTTTTACTCTCACACGCTCTTTAGCTGCGAAGAATGCGGAAGAAGCTTCGAGAACAACCGCTGTTACCGCTACCACATCAAAATGTGTAGATCCGAACAGAAATCAACCTTCGACATGTATGAATGCCACGACTGCGGCTTGCAGTACGACAAGAAACCTTCGCTCAAAATCCACATCGTACAGAAACACCTAAACGTGCTGCCGTTCGTTTGTCAGACTTGCGGGAAGCGTACATCCACGTTAGCTCACCTCAGATCTCACGAAAAAGTCCACCAGAAAGATAGACAGTTGTTTGAGTGCCATTGTGGGGCGAAATTCCGGACTCTATTAGGACATCGATTACATATGCGTATGCATAGTGGTCTGAAGCCTTACAAATGCAACCAATGCGAGGAGTCCTTCATATCAGCGTCACGAAGACTGGATCATACCAAACGAAGGCACAAGAGCACGAGGGAGCTAGCTCACGGCTGTGAACAGTGCCCGGCGAGGTTCATACGGCCGTGGGAGCTGAGGAAGCATTATATGCAGTGCCATCAGTCTGTCGATGTGAAGGAGGAGAGCATGTGTCCGGGCGGCGTGTGCGCGACGTGCGCGAGCGCAGCGCTCGCCGCCGAAGAGTTCCGTCTTCTCGTGCAGAACGCGCACCGCGCCTGGCTTCGGACGGTCCACAACTTACAGAACCTCTCCTTCGAGTCCGACGACGCCAAGTCTCTCTGCGCATTCATATCTAAATCCGATGGTGCGATACAAGTGTTCAAAGACTGCACAGGCGGCGAACCTCGTGCTGTCATCGATAGGAATGTGAAAGCTCGCAAACGCGCCAAGAAACGCTCCGATGGACCTTCGGTCTCCTGCAGCGATTGTCCGAAACGATTCGCTAACCCCCAACTCCTGCGAGTGCATCTGCAGAACAGCGATCAGAAGGACGCCTGTTCCGTCTGCGGGGCTATGCTTCGGAGAGGAGAAGAGCTGAGGGATCATTTGGAAACTGTTCACGATCAGAGCACTTCGCTCTGTAAGTATTGTCCGACCCTGCATAGCTCCGAGGGGTTGAAGGATCACGAGAAAACGGCTCACAAGTCAGGCGCGTTGACTTGCAACGCTTGCGGCAGAGAGTTTAAATACCGCGGCGCGTTCGAGCAGCACGCGCAGATGCACGTCGTCCTGACCTGCAGACGTTGTGGGAAACAGTTCAGCAATAGAAGCTGCTACAGAGCTCACAGGGCGGATTGCGAGCCGGACGCGAAACCGAAACCTGGCACTGTGAATCGTTTGCGACGCTCGAACAACCGCGACCCGGGCACTTACGTCTGCGACTACTGCAGTAAAAGCTACAGCACGAGACCTCAACTGAAGAACCATATCCTTTGGATCCATTTAGATCACCGGCCGCATCAGTGCTCTTGGTGCGGCAAACGGTTCTATACCTCGGCGCGTTTGACGGAACATACCGTCGTCCACACTCGCGTTAGGAACTTCGAGTGCGATATATGTGGTGCTAAGCTTGTGTCTAAAAGTGCGGCGATTTATCATAGAAGACGACATACAGGGGAGAAGCCATATGTGTGCGATGATTGTGGTGCAGCTTTCATATCTTCTTCGAGACGTTTGGAGCACGCGAAGCGGAAACATAACAAAGGGATTAGGTTCCAATGCCTGCATTGTCCGGCTAGCTTCGTACGGCGGAGGGAGTTGGAGAAGCATGATGAGAAGAATCATAAGCATTCTCCCGCTGTCATGCCCGTGCTTGAATCGTGA
- Protein Sequence
- MLVTKKVFSYNLVDEDPILPPGLCRACADDVITSAKFKHLCNKSAQRWNEAAGNFSKLDLECEDKTIFFMCADNDIVVCENRTESVESAATLLSKYKKAKKRARRKEFACCCPYCGKQFVTVDLFNDHLKLGKKRVCRECGLVLSKSELATHLRVVHQKEYRDCNICHDLFRSNSDVNFHMTQLHGPNSHNCQACGRGYRNERGLRAHFYSHTLFSCEECGRSFENNRCYRYHIKMCRSEQKSTFDMYECHDCGLQYDKKPSLKIHIVQKHLNVLPFVCQTCGKRTSTLAHLRSHEKVHQKDRQLFECHCGAKFRTLLGHRLHMRMHSGLKPYKCNQCEESFISASRRLDHTKRRHKSTRELAHGCEQCPARFIRPWELRKHYMQCHQSVDVKEESMCPGGVCATCASAALAAEEFRLLVQNAHRAWLRTVHNLQNLSFESDDAKSLCAFISKSDGAIQVFKDCTGGEPRAVIDRNVKARKRAKKRSDGPSVSCSDCPKRFANPQLLRVHLQNSDQKDACSVCGAMLRRGEELRDHLETVHDQSTSLCKYCPTLHSSEGLKDHEKTAHKSGALTCNACGREFKYRGAFEQHAQMHVVLTCRRCGKQFSNRSCYRAHRADCEPDAKPKPGTVNRLRRSNNRDPGTYVCDYCSKSYSTRPQLKNHILWIHLDHRPHQCSWCGKRFYTSARLTEHTVVHTRVRNFECDICGAKLVSKSAAIYHRRRHTGEKPYVCDDCGAAFISSSRRLEHAKRKHNKGIRFQCLHCPASFVRRRELEKHDEKNHKHSPAVMPVLES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -