Etri022029.1
Basic Information
- Insect
- Epirrhoe tristata
- Gene Symbol
- -
- Assembly
- GCA_951394285.1
- Location
- OX596164.1:3795669-3801297[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.016 1 10.4 0.0 3 23 61 82 59 82 0.95 2 25 0.2 13 6.9 0.1 2 23 106 128 105 128 0.96 3 25 0.0015 0.1 13.6 0.6 2 23 152 173 151 173 0.96 4 25 0.8 54 5.0 0.6 1 21 177 197 177 198 0.92 5 25 3.8 2.5e+02 2.9 0.3 3 23 241 262 239 262 0.84 6 25 0.46 31 5.7 0.2 2 23 288 310 287 310 0.96 7 25 0.012 0.82 10.7 0.2 2 23 334 355 333 355 0.94 8 25 0.0001 0.0068 17.3 0.0 1 23 359 382 359 382 0.97 9 25 0.095 6.4 7.9 0.2 1 23 386 409 386 409 0.97 10 25 0.12 8.3 7.6 5.7 1 22 448 469 448 471 0.88 11 25 0.25 17 6.6 0.8 1 21 545 565 545 566 0.96 12 25 0.019 1.3 10.1 0.5 3 23 595 615 594 615 0.95 13 25 0.00077 0.051 14.5 0.3 2 23 638 659 637 659 0.97 14 25 0.77 51 5.1 0.1 1 23 663 685 663 685 0.94 15 25 0.0096 0.65 11.0 0.3 1 23 690 713 690 713 0.85 16 25 3 2e+02 3.2 6.4 1 23 719 742 719 742 0.96 17 25 9.1e-05 0.0061 17.4 1.6 1 23 749 772 749 772 0.98 18 25 2.4e-06 0.00016 22.4 0.8 1 23 779 801 779 801 0.97 19 25 0.0025 0.17 12.9 0.3 1 23 881 904 881 904 0.98 20 25 1.6 1e+02 4.1 0.1 2 23 931 952 930 952 0.95 21 25 0.00016 0.011 16.6 0.7 1 21 1000 1020 1000 1025 0.94 22 25 0.27 18 6.5 0.0 2 23 1033 1055 1032 1055 0.94 23 25 0.12 8.2 7.6 1.4 1 23 1061 1084 1061 1084 0.87 24 25 1.4e-05 0.00095 20.0 0.7 1 23 1091 1114 1091 1114 0.96 25 25 0.00022 0.015 16.2 5.4 1 23 1123 1145 1123 1145 0.98
Sequence Information
- Coding Sequence
- ATGAagttcttttcttttttaggGCGCCGAAAGAAAATTGATGAATTAAAGAaggaaacaaaaccaaaaaagAGATTATTTGAAAGACAGGTAAACCAGAACCCACAATGGAAAAATGCTGTGCTTGTACTAAAACACTCAACAGCAATACCTTTTAAGACATGCTTTAACAGAATAATTTGTTCCTACTGCCAAGAAGAATTCGAACCAATGTCGGCACTAAGAGAACACGTTAAGAGCGTGCATTCTAACGCTGATTTCAACAGTGCGTTTTATAAAGTTATAGACGGACTAAAAGTTGATATTACCCAAATGCAATGTAATATTTGCTCCACGGATATTTCGGACATCGATGCACTAATGACACATTTATCGAAGACTCACGATATACCGGTGAACTTTGATGTATCTTTTGGAGTGTTACCGTATCGCCAAAGCTCTACCGCGCTCTGGATGTGCCTTTATTGCGACAAGACATATATCAAATTCTCGCAAATCAACGAGCATTTACGAAGCCATGTTAAGATATTCACATGTGATAAATGCTCCGCTACGTTCTTATCAATTCATGGTTTGAGACAGCACGAGCGAAGTTTTAAGTGCTACAAGATGAATTACAAACCACGTTTCGGTAAGACTTTAAAACATAGAAGTAATACAGAGATAATACTGCAGTGTTCCACGGCCTGTCCATTCAGAACTTGGGGGCAGAATTTCAATTGTATATTCTGTCGGGTACAGTCCAATGATCCGAACGGCCTTAGAACGCACATGGCGACGCGCCATGCTGATTTTGACATCGGTCAAGTCTTCAATAGAAAACTACGGAAAGAGTTTCTGAAGGTCGATATCACCGATTTGCAGTGCAAGCTTTGCTTTATGCGAATCGATTCTATAGACGATCTGATGGTCCATCTTAAAAGCGACCACAAGCAGCCTATAAGTACCGATGTAGAGCCTGGAGTTCTTCCATTTAAACTGAAAGACGGTTCCAGCTGGCAATGTGCGATATGTTCGATTCAGTTCTCCGATTTCATATCTTTGAAGAAGCATACTGCTGAGCATTATCAGAATTATGTGTGTGACACATGCGGCGAAGGGTTCATTACAGAAACTGCTCTGATCGCACATACTAGAATACCGCATGGTAATAAGTACGCTTGCGGCCGGTGTGTTGCCACCTTCTCCACCCTTGAAGAGAGGAGTATTCATATCAAAACTCAGCACACAACTCTTCCATACATGTGCATATATTGCAAAGAAAACCCACGATTTGCGACATGGGAGCTCCGCAAACGACATCTCATGGAGTTCCATAACTATAAGCCCGGTGCTGATATGTACGAATGCACCACTTGCCACATGACGTTTAAAACTAGGTCGCAGAAATACCACCACAATGTTAAAGCGcatagaacaaaaaaagagGCAGAATATAgaaaTCGTGGACAAAACAGCAATGAAACTTTAAAAGTTGAGGATGACAATAACGTTTGTTTAGAAGTGAAACCTAAACCAAAATCCAAGTATCAACGGAGCGCCAGATCCGAAGCTCGCATCGCTATCAAGCAAAATGCTACATCCATCTTGCAGTGCTGGACATTAAGTCCCTTCAGatggaggaaaaataaattcaagtgTGCCTATTGTGAAGACAATTTCATCGAATGCAACCAGCTCAGAGAACATATAAGACTTTGCTCCACACAGCACAACACTAAAGACATTTACAACAAATTCAAGGAAATGCCTCTTATAAATGTGGATAGTACTGAAGCCATATGCAGCTATTGTTCCACTCCATTCACGGATGTCGCTCAAATGCGCCACCATGTCATCCAACATGGGCTTGAATTCGACTCCACCCATCCGGACGGAGTGCTTCCATTCTACTTAGATAGGGAATCTTGGAAGTGCGTAATATGCGATGAGAAATTCAACAATTTTGTTAAACTCTACGAGCATATGAATGTTCACTACCAACATTATATCTGTGCTGCCTGTGGCAAGGGGTATATGACTGGAGCACGCCTGCGGAAGCATTCTGAAGTTCATATGTCAGGGTCATTCCCGtgtaatgattgtggtagggtTTTCACAATGCGCACTGCGAGAGATTCTCATAAAGCAATGACGCACGCCAAGGGTTCTAGATACGAATGTCCTCACTGCTGCGTCCGATTTGATAACTACTACCATAGGATGAAGCATTTGAAAGAGGCTCACAGTGAAAAAGAAGTGGTCTATAGCTGTCCTCATTGTGATATGACTTTCAAAACGAGCGGCAAAAGAGCCAGCCACGTCCGTACTGTTCACTTTCCCCCACAACATAGCTTTAGTTGCTCGTTTTGCGGCTGGCCCTTTAAAACTAACTATGAACTAAAGAGGCACATAGTCAGGCACACCGGGGAAAGAAATTTCCATTgttcagATAATGAAGCTCAGTCGATATATGTGGCTAAAAATGGTAGGAGGTTGAAGGAAAATGTTAGTGAACGCCAGATGCGTAGGCGACGTCGTGCCAACAACGAATACCCTGAAGAATCCGACAAACGAATCTCCAAGACGATGATGATGCGAAACGCCACTACGCTTCTTGAGTGTTCAACGGCGTGGGCCTTTCGGTGGTACCGAGGATCTTTCTATTGTGCTTACTGCGACGTCAAATTTGTTGAAACTCAATTGCTAAGAGACCACGTTAGAACTATCCATCTCAACGAACCGCCgtctaaaagagttttctcaAAACTCAGAGAGAATAACATGGTCAAGATAGATGTAACTCAGTTGCAATGTAGATTCTGCGATGTCGGTCTCGGTAGCATTGAATATCTAAAAACCCATCTCGAATCACACGGTAGGATTATTAAGCGAAACTACAGCGACGGAGTACTGCCTTTCAAACTAGATGAAGGTGGATTTTTCTGCCAAATGTGCTCTTCTCACTTCCTCACCTtcacaaaaataaacgaaCATATGAACACTCATTACCAGAACTACGTTTGTGATACTTGCGGGAAAGGGTTTATCTCGAAATCAAGATTTAGAGCACACATTCATGTAGAGAATAATCACCTAACGGAAAAAGCTAGCATCCCTTGTGGAATATGCGATGAAGTGCTAAGTTCTAAGGCTGCGAGGCTGAGCCATAGATTGCGGGTCCACCGCAAAGGAGTTCGGTACAGCTGTCCGCGATGTCCCGAGATGTTCACTACTTACAACGCTAGGTCTAGTCATTTGGTTCACTTCCACGCTCAGCAGAGCCTGGTATATGTGTGCAATGTTTGTGGCAAGTCGTTCAGTACTAGTTCGAAACGCTCAGCGCATCGCAAGCTTGCCCACAGCTCACCACCCCGACAGGAAAACCATCAGTGCAATTACTGTACAGCTCATTTCGTAACCAAGTCTAAGCTCGCAAGGCATTTGAAATCGCATAAAACGTGA
- Protein Sequence
- MKFFSFLGRRKKIDELKKETKPKKRLFERQVNQNPQWKNAVLVLKHSTAIPFKTCFNRIICSYCQEEFEPMSALREHVKSVHSNADFNSAFYKVIDGLKVDITQMQCNICSTDISDIDALMTHLSKTHDIPVNFDVSFGVLPYRQSSTALWMCLYCDKTYIKFSQINEHLRSHVKIFTCDKCSATFLSIHGLRQHERSFKCYKMNYKPRFGKTLKHRSNTEIILQCSTACPFRTWGQNFNCIFCRVQSNDPNGLRTHMATRHADFDIGQVFNRKLRKEFLKVDITDLQCKLCFMRIDSIDDLMVHLKSDHKQPISTDVEPGVLPFKLKDGSSWQCAICSIQFSDFISLKKHTAEHYQNYVCDTCGEGFITETALIAHTRIPHGNKYACGRCVATFSTLEERSIHIKTQHTTLPYMCIYCKENPRFATWELRKRHLMEFHNYKPGADMYECTTCHMTFKTRSQKYHHNVKAHRTKKEAEYRNRGQNSNETLKVEDDNNVCLEVKPKPKSKYQRSARSEARIAIKQNATSILQCWTLSPFRWRKNKFKCAYCEDNFIECNQLREHIRLCSTQHNTKDIYNKFKEMPLINVDSTEAICSYCSTPFTDVAQMRHHVIQHGLEFDSTHPDGVLPFYLDRESWKCVICDEKFNNFVKLYEHMNVHYQHYICAACGKGYMTGARLRKHSEVHMSGSFPCNDCGRVFTMRTARDSHKAMTHAKGSRYECPHCCVRFDNYYHRMKHLKEAHSEKEVVYSCPHCDMTFKTSGKRASHVRTVHFPPQHSFSCSFCGWPFKTNYELKRHIVRHTGERNFHCSDNEAQSIYVAKNGRRLKENVSERQMRRRRRANNEYPEESDKRISKTMMMRNATTLLECSTAWAFRWYRGSFYCAYCDVKFVETQLLRDHVRTIHLNEPPSKRVFSKLRENNMVKIDVTQLQCRFCDVGLGSIEYLKTHLESHGRIIKRNYSDGVLPFKLDEGGFFCQMCSSHFLTFTKINEHMNTHYQNYVCDTCGKGFISKSRFRAHIHVENNHLTEKASIPCGICDEVLSSKAARLSHRLRVHRKGVRYSCPRCPEMFTTYNARSSHLVHFHAQQSLVYVCNVCGKSFSTSSKRSAHRKLAHSSPPRQENHQCNYCTAHFVTKSKLARHLKSHKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -