Etri000228.1
Basic Information
- Insect
- Epirrhoe tristata
- Gene Symbol
- -
- Assembly
- GCA_951394285.1
- Location
- OX596136.1:2312402-2314690[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.1e-06 0.00014 22.5 3.7 1 23 11 34 11 34 0.95 2 21 0.0017 0.11 13.4 1.1 2 23 40 62 39 62 0.95 3 21 0.00013 0.0084 17.0 0.1 2 23 71 93 71 93 0.93 4 21 0.0001 0.0068 17.3 2.7 2 23 102 124 101 124 0.95 5 21 0.00027 0.018 15.9 0.3 3 23 133 154 132 154 0.95 6 21 3e-06 0.0002 22.1 0.7 2 23 162 184 161 184 0.96 7 21 1.6e-07 1e-05 26.1 2.0 1 23 190 213 190 213 0.98 8 21 0.00024 0.016 16.1 0.7 3 23 246 267 244 267 0.95 9 21 0.002 0.14 13.2 0.8 1 23 292 315 292 315 0.98 10 21 1 67 4.7 0.6 2 21 323 342 322 343 0.92 11 21 0.0038 0.25 12.3 0.9 2 23 352 374 352 374 0.95 12 21 0.0057 0.38 11.8 6.7 1 23 397 420 397 420 0.96 13 21 0.00019 0.013 16.4 0.7 2 23 427 449 426 449 0.96 14 21 0.00024 0.016 16.1 4.3 2 23 456 478 455 478 0.94 15 21 0.013 0.85 10.7 1.5 1 23 484 507 484 507 0.96 16 21 0.19 13 6.9 7.1 2 23 515 537 515 537 0.95 17 21 5.3e-05 0.0035 18.2 0.1 1 23 544 567 544 567 0.97 18 21 0.073 4.9 8.3 2.5 1 23 574 597 574 597 0.88 19 21 0.0048 0.32 12.0 3.2 2 23 611 633 611 633 0.96 20 21 6.4 4.3e+02 2.2 0.2 3 12 653 662 651 667 0.83 21 21 1.7 1.2e+02 3.9 1.4 1 12 681 692 681 695 0.90
Sequence Information
- Coding Sequence
- ATGTCGTTTATGTATCCAAACAACTTAGATTTTTACTGTGATTATTGTGATCGTGCTTTCACTAGGAAGTATAACCTCCAAACCCATATTGAAAACTGTCATAATAACTCCTCTTGTACCTGTGAGGTTTGTGGCTGCAAATTTGGGAGTCCAGCTGGCTTACAATTGCATTTATCTCGAGGTCATAACAGGCACGGACAATCTTCCCCCGAATGTGATGTATGCGGAAGGAttttttcaagaaaaataaacataacttCTCATATGATAGCTTTGCATCTACAAGGCAGAAAACCTGTAATACGTTGCAAGATTTGCGAGAAGATATGCACCACAGAACGGAATTTAAAAACGCATATGAATCAACTACATAATACTGACGTAAATTACCCTAATTGTAATGAGTGTAATATCGTTTTCAAAAGCAATATCTCTCTGAACGTTCATTTGAAGGCTTTCCACAATGAGAATGAGAGAAAAATACAGTGCGAGCTATGTCAAAAGGTGTATACCAATAACAGAAATCTTAAGAGACACATTGAAATGTATCATGGTAAGAGAGAAGAATTTAAATGTGAAATTTGCCCTAAAACCTATACTTCTAAGCAGAGTTTAAGACGCCATATTAAAACAAGTCATAATGATACAGACGTTCAAAAAACTGATATCAAGCCTCTTATTCACAATGAGAGTGATGGTTTTAGTGATTATAATAGTGAAAAAAACGCGTTATTTTGTGAGACTTGCAAGAAACCATTCAATGACGAAAAACTCCTACGGCAGCATATTAAACTTGATCATTCCTTTGATACATTCTATGAGTATTGCAAGAATTATCTGATAAGACAGAGCGAGATAGCGACGCAGAAagtttttaaatgtgagttttGTTTCTCAGCTTTTATAAGCGTCTATGAACTAAAAGATCATATGAAAGTACAGCACGAAATAGAATACTGTCTATCAACTTGCAATGTATGTTTTAACAAGTTTTACAGTAAAGAAACTATGGTAGAACATAAGAAGATCTGCTTGCCACCTCCTGACGTAAATACTTGTAATTACTGCGATAAACTTTTCACTGACGTGTCTAGCTTAGAGTTTCATACGAGAATATTTCATCCGCAATCACAAATCGCTGATTCCTGCATATCTTCGACTAAAGACGATCCGACAGACGTGTGTTCTTACAAATGTCGTCACTGCGATCGAATGTACTACAGTGAAAGATCGCTGAAACACCACGTGAAATTAAAGCACACGAATGTAGAGGTAGTTGAGTGCGAGTACTGTTCGAAGATTTGCAACAACAAATACTATCTCGCATCGCATATCAAAATTGTCCACAATAACGATACTTGGTCGAAATGCGACTACTGCGAGAAGAGATTCAAATCTAAGAGAAATATACGAAGACATATTGAACACACACACATGGGTATGCAACGATACAAGTGTATTGAGTGTGAAACtcttttcaaagaaaaacgcAGCTTACGGAAGCACGTCAGGATAAAGCATCCCAATTCCGCGAGCTTTCCTCAATGCCATATTTGCCACAAAAGATTCGAATCCGCTAAGTCCTGCAAAATCCATCTGAAGCTGCTTCATTGTTTCAATATGAATACGTACCCTTGCGATCTGTGTTCAGTATCGTTCAGCTCAAAAGAAGCTCTCAAAATCCATTTAGCCACCAAACACTTGGCTAAAGACGAAATTTACAAATGTGAGGACTGTAATCTCGTCTTCAAAGGGTCGCAGAAGTTTGACGAGCACAATGAATCGTGCCATGTGAATTTCGTTCCTAACCCAAAGCAGAAACAACTACCTCGATGCGTTCTTTGCATGAAAGATTTCAGTACACGCAAAACGTTAAAACGGCATATCAAAAAGTTCCATACAGACTTCGAAGTTGAAGAACTGACGAACTACGCAGCATATAGCGTATCGACTGACTGCGAACAGTGTTTGAAAAGCTTCAGGGAGGACAGTAATATAAGTACCTTCAACAGAGTAAAAAAGTCTCGTAATGCACTTATCTTTAAGTGCGACAGTTGTAAAACCTCTTTCAACACCTTAGAGTTCGCAGTTCAACTGCAGAGGTTCACGCAAGAAAAGTCGATGGTTCTCAGTGAGTTGTGTACCACACACATGAGTGACGAAGATGCCTCGTGCTCTGCCTTTGGCTCGTTGCATGAATTTATGGAGCCAGAAAGTACAACGATTGATATCAAACTAGAACCAATCGATTTAGATGAtgatgtcaaagttgaaaatgTTTCACCGTGA
- Protein Sequence
- MSFMYPNNLDFYCDYCDRAFTRKYNLQTHIENCHNNSSCTCEVCGCKFGSPAGLQLHLSRGHNRHGQSSPECDVCGRIFSRKINITSHMIALHLQGRKPVIRCKICEKICTTERNLKTHMNQLHNTDVNYPNCNECNIVFKSNISLNVHLKAFHNENERKIQCELCQKVYTNNRNLKRHIEMYHGKREEFKCEICPKTYTSKQSLRRHIKTSHNDTDVQKTDIKPLIHNESDGFSDYNSEKNALFCETCKKPFNDEKLLRQHIKLDHSFDTFYEYCKNYLIRQSEIATQKVFKCEFCFSAFISVYELKDHMKVQHEIEYCLSTCNVCFNKFYSKETMVEHKKICLPPPDVNTCNYCDKLFTDVSSLEFHTRIFHPQSQIADSCISSTKDDPTDVCSYKCRHCDRMYYSERSLKHHVKLKHTNVEVVECEYCSKICNNKYYLASHIKIVHNNDTWSKCDYCEKRFKSKRNIRRHIEHTHMGMQRYKCIECETLFKEKRSLRKHVRIKHPNSASFPQCHICHKRFESAKSCKIHLKLLHCFNMNTYPCDLCSVSFSSKEALKIHLATKHLAKDEIYKCEDCNLVFKGSQKFDEHNESCHVNFVPNPKQKQLPRCVLCMKDFSTRKTLKRHIKKFHTDFEVEELTNYAAYSVSTDCEQCLKSFREDSNISTFNRVKKSRNALIFKCDSCKTSFNTLEFAVQLQRFTQEKSMVLSELCTTHMSDEDASCSAFGSLHEFMEPESTTIDIKLEPIDLDDDVKVENVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528500;
- 90% Identity
- -
- 80% Identity
- -