Etri022052.1
Basic Information
- Insect
- Epirrhoe tristata
- Gene Symbol
- -
- Assembly
- GCA_951394285.1
- Location
- OX596164.1:3966793-3972214[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0025 0.17 12.9 0.3 1 23 12 34 12 34 0.97 2 23 0.7 47 5.2 3.8 1 23 39 62 39 62 0.94 3 23 0.013 0.89 10.6 1.2 2 23 70 92 69 92 0.94 4 23 2.1e-06 0.00014 22.5 2.6 2 23 100 122 99 122 0.97 5 23 9.9e-07 6.6e-05 23.6 0.5 1 23 128 150 128 150 0.98 6 23 0.00027 0.018 15.9 0.3 1 21 156 176 156 177 0.94 7 23 0.008 0.53 11.3 1.0 1 23 224 246 224 246 0.97 8 23 0.0022 0.15 13.1 0.1 1 23 343 366 343 366 0.94 9 23 0.7 47 5.2 5.4 1 23 371 394 371 394 0.87 10 23 0.0092 0.62 11.1 2.4 2 23 400 422 399 422 0.95 11 23 2.5e-05 0.0017 19.2 0.4 2 23 430 452 429 452 0.96 12 23 0.0098 0.66 11.0 3.2 1 23 458 480 458 480 0.97 13 23 1.7e-06 0.00012 22.8 1.7 1 23 486 508 486 508 0.99 14 23 2.1 1.4e+02 3.7 5.2 1 23 615 638 615 638 0.94 15 23 0.079 5.3 8.2 0.0 2 23 665 687 664 687 0.96 16 23 1.6 1.1e+02 4.0 3.9 1 23 709 731 709 731 0.97 17 23 0.31 21 6.3 0.2 1 23 735 758 735 758 0.88 18 23 8.6e-05 0.0058 17.5 1.8 1 23 764 786 764 786 0.98 19 23 0.0003 0.02 15.8 2.4 1 23 792 815 792 815 0.96 20 23 0.00025 0.016 16.1 0.1 2 23 823 845 822 845 0.96 21 23 0.00013 0.0084 17.0 2.9 1 23 851 873 851 873 0.97 22 23 4.2e-07 2.8e-05 24.8 0.5 2 23 880 901 879 901 0.97 23 23 0.0075 0.5 11.4 3.8 1 23 907 930 907 930 0.98
Sequence Information
- Coding Sequence
- ATGCAGTTGCATATGAGTGTACACTACAGAAACTATGAGTGCGACGAATGCAGCGCGACTTTCATCAACAAAGCCACGCTGAGATTTCATATCATCAGGCACCTGACGGGCACTTTCACATGCCGCTTCTGTGCCAAATCATACGCCACTAAGGACAAACGAAATTCCCATGAGAAGCACGTTCATTTTAGTGATCATAAACGAAACAAATGCACCTACTGCGATGAATTTTTCACCAGATACGTCAAGAAAATGGAACACATGGTGAAAGTTCACGGTCACAAAGAACGTGTCGTCAAGTGCAACAATTGCGACAAAACGTTCACAACCAAAGAAATGCTGACTAAGCACACAAAAAGAGATCATCTGAAGGAACGCAACTTTATATGCGAGATTTGTGATAAATCTTTCTTTAACAACTATGGCTTGGGTAGGCATATTCGCACTCATTTAGTCGCAAAGCCGTACACTTGCGATGTTTGCCAAAGGAGCTTCAACCGTAAGGATAACTGGCTGGAGCATTCGCGTGATCAAGAAGACGAACAAGCACGAGGCAAACAAAAATCTAGTAAATCTGTTTTTGAAGAATTAGTAAAGCAAAGGCAAAATTTGAGGCAAATATTGATGTCAACAAACGCTACGCCGATACGACGACATACTGACAAGGGCTACGTGTGTTGCTTCTGTCCAAAGTACTATGTAAAGCCCGCAGATCTTAAAGTCCATTCTCTAAGCCATGACACGAAAGCTTTTGCCTCTTACAAGGCTAAAACCGGCCTTTCAAAATTCCTAGTCAATCTTGACGTCACTGACTTAGGTTGCAAAATATGCGACCAAAAAATTGATCACACAGAAATCATAGACCATCTCAAAggtcacaaacaaaatatgcACAGCGATATCAACAACTACATAGTTCCCTTCAAATTCGATGATGACGTACACGTACACAAATGTATCATGTGCTTAGAAGTTCATAGAACATTTAAAGCGCTGCAGTTACATATGTATGGACATAATAGGAACTTTGTTTGCGATGAGTGTGGCGCTGGCTTCGTAAACCAACAGAAGATGACTACGCACGTGCTAAACTCTCACAAAATTGGATGCTTCACATGCAACAAATGCGGGGAGAAATTCGAGACCATGAAGAAGAAACGAACCCATGAACATCATGCGCATTTAGAAAAGAGAAGCAAATGTGGCCACTGCGGTGAAAAGTTCAGGAGTTTCGATCTAAAACGAGTGcatcaaataaaaatgcacAATATCAAAGATATCTTGTTGAAATGCAGCGCTTGCGACAGAAGCTTTACAAAACCGTCTCTACTATCCGCCCATATCAAGAAGGATCATTTAATGGAGACGAGATTCAAGTGCACCTATTGCCCAAAAGAATACTTTTATAAGTTCCTCTTAGATAAGCATACGGTCAAACACACGCGTGAGAAGAATTTCAAATGTGAATTCTGTGACAAAAGATTCTCTCGATTAAATTCTCTTCAAGAGCATATAAAGATTCATGTTGGCGACCgTGACAGTGACGTCAAACCCATTAAAGTGGAAATAGAATGGGACGTAGACAAAAATATGGAAGTAAAAGCAATAAAGGAAGAGAAATTTACATCAAAAGGCAGTAGAAAGAGGGAGAAAGGAATAACAAAACGGGCGTcaaaaaataagaaagttGACAATGTAAAATCAGAGAAATTCCAACCACTGAAAATCAAACCAGCAGCTAAAGCGGAGGTCTTAGATGTCGATAAACATCGATATAACGTACGAGCTATATTGCAGTATTCAAATGCGACCCCGATCAGAGCGCACTATGCCGGCAACGGCTACGCTTGCTGTTTCTGCAAGCAGTACTTTCACAAAGCAGCCGATCTCAAGTCTCATACCTTGCAAACACACGACGATCAAACCAAAAGAAAATACATGCAAAAAGCATTTCTTTTCAAACTATTCGTTAAACTCGATATTACGTTTTTGCGGTGCGGCATCTGCTCCATTGAATTGGCCAATCTCGACGATCTTATCGAACACTTGAACGTAGCGCACGATAAAGGCATTCACACTGACgtacaaaatcaaattatGTGCTTCAAATTCGAGGATGAAGGATACCGCTGTTTCATATGCTCTGTAGAATATCatagtttcaaaaatttaCTAGAACACGCGCATTCGCACTATAGGAATTTCGTCTGTGACGTGTGCGATGCCGGATTCATCAATCGACTAAAGCTGTACGGACACGTATACAATAAACACAAAGGTGCAGGCTCTCATAAATGCAGTACTTGCGAGAAAGTTTTCGACACTCCCATTAAACTGAAAACACACGAACGTATTCATTCTGGTTCGGTCCTTTACAAATGTCACGAATGCGGTCAAAAATTCCCtaagaagaaagaaaagagAGATCATATGATAAACGCGCATGGAGCTGAATTCGCTCAAATCAAATGTACAGCTTGTGAAAAGGTGTTTATAAGTAAAGCGTCGCTAAGTGTCCACATTAACAGAGATCATCTTATGGATAGGAGACACCAGTGCGAGCTCTGCGAGAAAACTTTCTTTACATCCTCGTTTTTGAGAGATCATATGGTATCTCATTCTAGGGTACGGGAAATTCAATGCGATGAATGTCCTAAAACGTTTGCTAGGAAGAAGGCATTACGGGAACACATGAAATCGCACACTGGTGATCGCAGGTTCAAATGTACTTACTGTGATATGGCGTTCTTGCAGAAATGCAGTTTGAAAGGACATTTGCGAAGTCGCCATGATGCTGAATTACAATGA
- Protein Sequence
- MQLHMSVHYRNYECDECSATFINKATLRFHIIRHLTGTFTCRFCAKSYATKDKRNSHEKHVHFSDHKRNKCTYCDEFFTRYVKKMEHMVKVHGHKERVVKCNNCDKTFTTKEMLTKHTKRDHLKERNFICEICDKSFFNNYGLGRHIRTHLVAKPYTCDVCQRSFNRKDNWLEHSRDQEDEQARGKQKSSKSVFEELVKQRQNLRQILMSTNATPIRRHTDKGYVCCFCPKYYVKPADLKVHSLSHDTKAFASYKAKTGLSKFLVNLDVTDLGCKICDQKIDHTEIIDHLKGHKQNMHSDINNYIVPFKFDDDVHVHKCIMCLEVHRTFKALQLHMYGHNRNFVCDECGAGFVNQQKMTTHVLNSHKIGCFTCNKCGEKFETMKKKRTHEHHAHLEKRSKCGHCGEKFRSFDLKRVHQIKMHNIKDILLKCSACDRSFTKPSLLSAHIKKDHLMETRFKCTYCPKEYFYKFLLDKHTVKHTREKNFKCEFCDKRFSRLNSLQEHIKIHVGDRDSDVKPIKVEIEWDVDKNMEVKAIKEEKFTSKGSRKREKGITKRASKNKKVDNVKSEKFQPLKIKPAAKAEVLDVDKHRYNVRAILQYSNATPIRAHYAGNGYACCFCKQYFHKAADLKSHTLQTHDDQTKRKYMQKAFLFKLFVKLDITFLRCGICSIELANLDDLIEHLNVAHDKGIHTDVQNQIMCFKFEDEGYRCFICSVEYHSFKNLLEHAHSHYRNFVCDVCDAGFINRLKLYGHVYNKHKGAGSHKCSTCEKVFDTPIKLKTHERIHSGSVLYKCHECGQKFPKKKEKRDHMINAHGAEFAQIKCTACEKVFISKASLSVHINRDHLMDRRHQCELCEKTFFTSSFLRDHMVSHSRVREIQCDECPKTFARKKALREHMKSHTGDRRFKCTYCDMAFLQKCSLKGHLRSRHDAELQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -