Ealt023503.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751404.1:375475-383694[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.22 15 6.9 0.7 2 23 164 186 163 186 0.94 2 13 4.9 3.3e+02 2.6 0.1 1 23 192 214 192 214 0.85 3 13 4 2.7e+02 2.9 0.5 2 19 221 238 220 240 0.88 4 13 0.58 39 5.5 0.1 3 20 242 259 240 261 0.87 5 13 3.6 2.4e+02 3.0 0.4 3 19 285 301 283 306 0.90 6 13 0.18 12 7.1 0.3 3 23 342 362 341 362 0.92 7 13 0.063 4.2 8.6 4.6 1 19 362 380 362 383 0.75 8 13 0.002 0.13 13.3 0.0 2 23 399 420 398 420 0.97 9 13 5.5e-05 0.0037 18.2 0.4 1 23 427 449 427 449 0.98 10 13 0.026 1.7 9.8 2.3 3 23 457 477 456 477 0.98 11 13 0.0001 0.0069 17.4 4.2 1 23 483 505 483 505 0.99 12 13 0.013 0.88 10.7 6.5 1 23 511 533 511 533 0.95 13 13 0.17 11 7.3 5.7 1 23 539 562 539 562 0.98
Sequence Information
- Coding Sequence
- ATGGCTACAGCACGAACGTACTGTCGTTTCTGCGCCGAAGAGAAACCTTACAAAGAAATAGCGAATCTAACATTACAGGAAATGCAACAAAGTTTATTAGAAAAATTTACAGCTCTGGGACTGGCATTTGTggatttttctaataaaattctGCCTGAAACCGTGTGCATCTCTTGCTACGAGCTAACAACACTTTCCTGCGAGTTTTTTCTGAGAGTCAAGCAATCTCAAGTTGTGTTGAGTGAGTTATGTGGAGACAGTCTAAATGTCTGCGCTTTTCCTAATTATGAGAATGTTAAGGAAGAAAGTGATGGTGGACAGTATTTACAAGATGATCATCTACCCAGTTTTGAGGATGCAGAATCTCTTGTTAAGGAGGAAAAATATGAAGGAAAAACTGAGGGCTATGTTACAAgtacAAAATCAAACATTAAAACTAAAAGTGTTCATCTTAAGTCAAAGAAGAAAACATGGAATGCATATCCTTGGCAGTGTTCTATCTGTGGAATAACTAAGGGCACCTTAAGTGATCTAAGAGAACACTGTCGGACGGAGCATCTTAAGTGCTTCGCGTTTAAGTGCGCTGACTGCGAGGAGAGACAAGAGGGATTTGACGAGTTTGTGGCACATGTTAGAGGTCATCGGAAGGGCTTAAGaagCTACTGCGAACACTGTAATATAAAGCTAGAGGACAGTACACACACCGCTGCGCACGCGCAATGCTGCGCTCGTTGTGGGGCGAGCTTCGAGAGCACACGAGATCTGTACGGGCACCGAGAGAGATATGATGATACCTATGCTGGTCCAGAGATTGCCACAACTGACCGGACTTGGTCAGACTACCCCTCAATATGCCAGTACTGCCAACTTAAAGTATCAGATAAGACAGTTTTAATAGAGCATTGTATCGAAGCACATAAGACGTGCTTCGGGAGCCAATGTGTGGACTGTGATGTTCGTATGGattgttttaaaagttttgtcgAACATGTTAGAAGACATCGGCCATATTTGAAaaaCATCTGCCCATATTGCAACATATCCATCACCGACCCGAACCACACCTCGAAGCACGCCACAGCACACACTTGCTTAACTTGCGGGGTCACATTCCATCTCAAACGTCACCTCAGAACACACGAGAGAATAACCAAGTTGAAACCGAGGAAACGTGGACCATCCAATAAAAATAGCACGTGTCCTATTTGCGGAATGATAATGAAGACACCAGCATCTTTGAAAGGGCATTTGTTAACACATATGGACAGAAAAAGAAATTACACATGCGAGAGTTGCGGAAAAGCTTATTACACAAAAGGCAGTCTGGATGTGCACAGGAAAATTCATGACAAAACTGTCAAAGAAGCCTGCCAGATATGTCACAAAACCTTCCTAACAATACCACGTCTGAAGAAACACGTTAAAACGCATAATCTCGAAATGCCGTACCAATGTGATCATTGCAAAAGGTTTTTCAACTCCAAAGACAGATTAAGAGAGCATGTGAAAGTGCATATGGATTTCCTACCGTTTAAATGCAATTATTGCACTAAAAAGTTTCGACATAAAAGTATCATGAAGACGCATGAAAATCAGCATACAGGCGCTAGACCATACAGCTGCAATGTATGTTGTATGGATTTCGCTAATTGGTCTAATTGCAATAAGCATATGAAAAGAAAGCATGGGACTACTTTAGCGAAGAATGTAATGACCCCTCATGGTAAATTGGCTTTGAATCCTGAGACTGGGAAACCAGATCAACTGTTCATGGATAATAAGGTCAGGGAGTGGTCGGAGATAATGTTGATGGGGCGAGATAAAAAGAATTATCATGATAAAGTAAGTTAG
- Protein Sequence
- MATARTYCRFCAEEKPYKEIANLTLQEMQQSLLEKFTALGLAFVDFSNKILPETVCISCYELTTLSCEFFLRVKQSQVVLSELCGDSLNVCAFPNYENVKEESDGGQYLQDDHLPSFEDAESLVKEEKYEGKTEGYVTSTKSNIKTKSVHLKSKKKTWNAYPWQCSICGITKGTLSDLREHCRTEHLKCFAFKCADCEERQEGFDEFVAHVRGHRKGLRSYCEHCNIKLEDSTHTAAHAQCCARCGASFESTRDLYGHRERYDDTYAGPEIATTDRTWSDYPSICQYCQLKVSDKTVLIEHCIEAHKTCFGSQCVDCDVRMDCFKSFVEHVRRHRPYLKNICPYCNISITDPNHTSKHATAHTCLTCGVTFHLKRHLRTHERITKLKPRKRGPSNKNSTCPICGMIMKTPASLKGHLLTHMDRKRNYTCESCGKAYYTKGSLDVHRKIHDKTVKEACQICHKTFLTIPRLKKHVKTHNLEMPYQCDHCKRFFNSKDRLREHVKVHMDFLPFKCNYCTKKFRHKSIMKTHENQHTGARPYSCNVCCMDFANWSNCNKHMKRKHGTTLAKNVMTPHGKLALNPETGKPDQLFMDNKVREWSEIMLMGRDKKNYHDKVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00662693;
- 90% Identity
- -
- 80% Identity
- -