Ealt022908.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751403.1:1857307-1873626[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.094 6.3 8.0 2.6 1 23 299 322 299 322 0.94 2 11 0.17 12 7.2 2.2 1 23 329 350 329 350 0.98 3 11 0.47 31 5.9 0.7 1 23 354 377 354 377 0.95 4 11 0.21 14 6.9 1.1 1 23 386 408 386 408 0.97 5 11 0.00013 0.009 17.0 1.3 2 23 413 435 412 435 0.95 6 11 0.046 3.1 9.0 0.5 1 15 442 456 442 458 0.92 7 11 3.6 2.4e+02 3.1 0.2 10 23 951 964 950 964 0.89 8 11 0.019 1.3 10.2 0.4 1 23 977 999 977 1000 0.94 9 11 3e-05 0.002 19.1 0.4 1 23 1006 1029 1006 1029 0.95 10 11 0.00048 0.033 15.2 0.8 3 23 1040 1060 1039 1060 0.98 11 11 0.067 4.5 8.5 3.6 2 19 1067 1084 1066 1089 0.87
Sequence Information
- Coding Sequence
- atggaTATCGAATCAAGTTTGCctcacaatttattttatcgaaGCGCTACGCCCGAAAACAACCCAGTCAACCCACAAAGTGgttgtttttgttgtttggtTGAAAATGAGCCTCTAATTGATCTAAAAACATGCAAACATGCGCTGTTATTTCAAGAATACTACAAGACGAATCCTTCAACTCACCTCTACGTGTGCTTGCTCTGTCATAGAATGTTGGTGAAGGTGCAGTTATTTCAAAACCAAGTCAGAGAGAGTTGTATGGTTTTGAAGAAGCGGctttcccaaacatctaaaaaaattaacaacCTTGAAGTAACCAAAATAGTTACTTTTACATATCCGGATGATTTAGTAGAAACAGATGTCAAAATCGAAATTGACGAGGAACCCAATGAGAACCCGCCATTCGAATTTGTCACAGATGTAAAAATCGAACACGATTCAGACAGTTCCGAATTTGAAAATGATTTACCGCTCTCGGAGTTGTCTGTGGTGCCGCCCTCagaagtaaaaaaaacagttgaacCGCTTGAACCGACTCCGAAAAAGAATCTAAAAAGAAAAAGGCACGTGAAAATAAAACCTGTGAAAGAAAAAATAGTGAAACCAGTGAAGGAAAAAATAGTGAAACTAGTGAATGAAAAAATTGCATTACCAGTGAAAGGAAAAAATGCAAAACCAATGAAAGAAAAAATTGCGTTACCAGTGAAAGAAAAAAATGCAAAACCAATGAAAGAAAAAATTGCAAAACCAGTGAAAGAAAAAGCAGAAAAACCAAAAAAGCTCACCGATAGATACGAAGGAAAGGTTATTCTTTACAAATTAACAAGGCTAGAGTTAGAAGAAGAAAGGGAAAGAGAGTCCCAAAAAGATGCATATCTGAAATTGCCTTTCAAATGCGAGAGTTGTGTTAAGGGATTCGATCATGAAACTACTTTGAAGAGCCATAATGAAAAGCAGCATTCGGAGAAAAAGAACGGGTACAAATGTGATGTTTGCCAAACTATTCTTAGATATTCATCTTTCAAGGAACACACTAAAAGACACTACAGGAGGTACCAATGCGTGGCTTGTGGCAGACGCTCACAAGACATCCACTCACTAGCACAGCACTACAATTTACAGCATGATCCAGGCGCCATAACTCAACAGTTCAAATGTGCTGAATGTGATTTTATCACTGACTCGAACCGCGCGTACCGCTACCACCGCGACAAACACAAGCAGAAGAAGCAATGTACCGAGTGTGGAAACACCTTCGTTAGCACCAGCTCGCTACGTATACACATGCTGCACGTCCACAAGCACTCTTCACGCGAGTACAAATGCCCATTATGCGACAAACAGTACAGCAGTAACACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCGGCGACACACGCGCGCACCGCAGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAAGTAACACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCAGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACTCACAGCCACCACGCGGCGGCACACGCGCGCACCGCAGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACACACACACAGCCACCACGCGGCGACACACGCGCGCACCGCAGCCTACTGCAGACCCTGCCACACACACTTCAGGTAACCCACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGGCAACACACACAGCCACCACGCGGCGGCACACGCGCGCACCGCCGCCTACTGCAGACCCTGCCACACACACTTCAGtttcatgtttctcgCCATTGCGTAAACGATAATATTGTTGCCTATTGCAGATCACCGACGGGACTTGCCCATCATCTGCGAACTCACTCTGCGCACATCACTACTGTAAAGGAACAACAAAAATACATTTGTAACGAGTGCGGTGTGACGTATCTGAAGAAGGCAACTCTCCGAGAGCACATCGACTGGCATCATCTCAAAAAAGTACAGTTCGAATGCCCCATATGTTCTAAGATATTCAAGTCGTCGCCTGCGCTCCGAAGCCACAAGCGGTTTGTGCACGAAAAGCATATGAAGCCGCGGGATAAGATCTGTCATTTCTGTGGGAGAGGCTTCACGacaGCTGCAATCCTACGCTATCACATCCGAACGCACACAGGCGAGCGTCCCCTATCGTGCGAGCATTGCGGAGCCACCTTCGCACACTCCGCCGCGCTGTACACGCATTGCAAACTCAAGCACAAACCACGCACACTCAAGCATCAAAAAACTGAAAATACGTAG
- Protein Sequence
- MDIESSLPHNLFYRSATPENNPVNPQSGCFCCLVENEPLIDLKTCKHALLFQEYYKTNPSTHLYVCLLCHRMLVKVQLFQNQVRESCMVLKKRLSQTSKKINNLEVTKIVTFTYPDDLVETDVKIEIDEEPNENPPFEFVTDVKIEHDSDSSEFENDLPLSELSVVPPSEVKKTVEPLEPTPKKNLKRKRHVKIKPVKEKIVKPVKEKIVKLVNEKIALPVKGKNAKPMKEKIALPVKEKNAKPMKEKIAKPVKEKAEKPKKLTDRYEGKVILYKLTRLELEEERERESQKDAYLKLPFKCESCVKGFDHETTLKSHNEKQHSEKKNGYKCDVCQTILRYSSFKEHTKRHYRRYQCVACGRRSQDIHSLAQHYNLQHDPGAITQQFKCAECDFITDSNRAYRYHRDKHKQKKQCTECGNTFVSTSSLRIHMLHVHKHSSREYKCPLCDKQYSSNTHTATTRRHTRAPPPTADPATHTSGNTHTATTRRHTRAPPPTADPATHTSGNTHTATTRRHTRAPPPTADPATHTSGNTHTATTRRHTRAPPPTADPATHTSATTRRHTRAPPPTADPATHTSGNTHTATTRRHTRAPQPTADPATHTSGNTHTATTRRHTRAPPPTADPATHTSSNTHTATTRRHTRAPPPTADPATHTSGNTHTATTRRHTRAPPPTADPATHTSATTRRHTRAPPPTADPATHTSGNTHTATTRRHTRAPPPTADPATHTSGNTHTATTRRHTRAPPPTADPATHTSGNTHTATTRRHTRAPPPTADPATHTSGNTHTATTQRHTRAPPPTADPATHTSGNTLTATTRRHTRAPQPTADPATHTSGNTHTATTRRHTRAPPPTADPATHTSGNTHTATTRRHTRAPQPTADPATHTSGNPHSHHAAAHARTAAYCRPCHTHFRQHTQPPRGGTRAHRRLLQTLPHTLQFHVSRHCVNDNIVAYCRSPTGLAHHLRTHSAHITTVKEQQKYICNECGVTYLKKATLREHIDWHHLKKVQFECPICSKIFKSSPALRSHKRFVHEKHMKPRDKICHFCGRGFTTAAILRYHIRTHTGERPLSCEHCGATFAHSAALYTHCKLKHKPRTLKHQKTENT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -