Basic Information

Insect: Epirrhoe alternata
Gene Symbol: -
Assembly: GCA_963565295.1
Location: OY751404.1:4783440-4805687[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6 4e+02 2.4 0.5 3 12 228 237 227 239 0.86

2 13 0.31 21 6.4 0.1 2 23 394 415 393 415 0.95

3 13 0.027 1.8 9.7 0.0 1 23 425 448 425 448 0.93

4 13 0.016 1.1 10.5 1.6 2 21 532 551 531 552 0.93

5 13 0.047 3.1 9.0 4.3 2 23 608 629 607 629 0.95

6 13 0.38 26 6.1 1.2 1 23 640 663 640 663 0.92

7 13 0.0001 0.0068 17.4 1.2 2 23 670 693 669 693 0.96

8 13 0.06 4.1 8.6 0.2 1 23 699 721 699 721 0.93

9 13 0.0075 0.51 11.5 1.8 1 23 727 749 727 749 0.98

10 13 0.093 6.2 8.1 0.0 1 23 857 879 857 879 0.97

11 13 1.8 1.2e+02 4.0 7.2 1 23 886 908 886 908 0.95

12 13 0.0012 0.081 14.0 1.8 1 23 937 960 937 960 0.95

13 13 0.0018 0.12 13.5 1.8 1 23 967 990 967 990 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6	4e+02	2.4	0.5	3	12	228	237	227	239	0.86
2	13	0.31	21	6.4	0.1	2	23	394	415	393	415	0.95
3	13	0.027	1.8	9.7	0.0	1	23	425	448	425	448	0.93
4	13	0.016	1.1	10.5	1.6	2	21	532	551	531	552	0.93
5	13	0.047	3.1	9.0	4.3	2	23	608	629	607	629	0.95
6	13	0.38	26	6.1	1.2	1	23	640	663	640	663	0.92
7	13	0.0001	0.0068	17.4	1.2	2	23	670	693	669	693	0.96
8	13	0.06	4.1	8.6	0.2	1	23	699	721	699	721	0.93
9	13	0.0075	0.51	11.5	1.8	1	23	727	749	727	749	0.98
10	13	0.093	6.2	8.1	0.0	1	23	857	879	857	879	0.97
11	13	1.8	1.2e+02	4.0	7.2	1	23	886	908	886	908	0.95
12	13	0.0012	0.081	14.0	1.8	1	23	937	960	937	960	0.95
13	13	0.0018	0.12	13.5	1.8	1	23	967	990	967	990	0.96

Sequence Information

Coding Sequence: ATGTCCGAAAACGTCTACCAATTCCTCATCAATCTAGAACTAAACGATCCAGATATGGTCCAAAGCTACCACCAGCCTTTGGACAACCAACCATTGAACCTCGATGATGATCAGCTATACGTTTTAGATGACGGAACCCAGATCAGAGCCTCTCAAATACATTTTGACAACGAAGACGCTCCTCTAGATCTGCTACTTGAACAACTCCCTTTTGTCAAAGTAAAAGATGAAGAAGAAGCTGTGCCAAGCGATATATACGAAGATAAAATACACAAGATAATAGCTAGCCCTGTTCCCATAACAGATTCAAGCCCTAAACACGGTTTTATAAACCACGTACCTTTTAAACTAGTCTGCAATAACACTACCGGCTTTGAAGCTCAGTTCACAAAATATTTAGAGGCTAGTAACAAAACTTACGCGACGTtaaacaatgtaacaaaaaagaATAAGTCTCCACGTAGTTTGATAAGAGATAATTTCAATGATAAAGAAGAATTTAGGTATACACGTGAGGAGATACTGAATATGCTTAAAGATGCGCCTGTAACTAGTATTCCATATGAGAATAATGAGAAAAAGCATGTTAGGAAGACAGATCCTACTAAAATGGTTCAAAAAAGTAGCACAAAAGCGATTGATATAGAAGGTTTAGTTATAGGCGATGGAGGGAATAGGAGCTGTTTCATTTGCGGCAAAACTGTAAGCAATGATAAGATTTATCTATTCGATAAAGAAGATCAAAAGATACACAAATGCTCACCGCAGAAGAAAATGTCGACACAGCTAAAAATAATATGCGAAAGTTGCCTAAACGACAATTTTAAACCATCGAGAATGAAAGGCGCGAACCAATTTTTAAACTCGGACGAGTATTTGGTCATCCGGAACAACCAGCAATACATATTTCAAAAAACGAAgaatttcaaatttcgaacggAAACCATAGACAAGAGAAAGGATGAATTCGTGAAGTTTGAAATAGGTTCGGACGGAGAGATTGTTACGAAGCCGATAGATGATGACGTAATTTTAGTGCATGATGGTAGGAAAGACAGTTCAAGTGATGTTGAGATTGTTGAGGCTGATGTTGACAAGATCATAAACAATCTGGAGGAGGCTGATGAAGATGTTAAAGTATTTCTAGGGAAGTACGAAGGAGATGAGGTCAATGAACTTAAATGCAGATTCTGCGAGCTAATATTTTCGTCTGTATCAGAAGTGATTGAGCACGGAGAAACACATAAGCATGTTATTGAGGATGACGTTGTGTTTCCGTGCCCGTTGTGTGATTATGGTTATGCAACTTTCCAATGGCTAAGAGGGCATTTATTGGCGGCTCATGACAAGAAAACAGTGAAAACTACTGAATCAAATAAAGATGCAGAGAACAATTCAACGGAAGAAAATAATTCAGATTCTAAAACAACTTGTAAAAATGTCCCAGACATGATAATAAAAACGGAAGTGAAGCAGGAAGCTATAAGTAGTGACGATGAGATTTGGATCGTACAAACCGGCGATGACGAGTCGCAACAAGTGAGCCAATTGTTGGAGGCTGCTAAGCTGGACAACAATGAAGATCGAAGCAAGAAATGTCATAATTGCAGCATCACCTTTCCATCATCAGAAGCCCTCGCAGCGCATAAATGTCGCGGGAAGAAACGCAGATCAGACGACGATACTGTGTTTATACCTACCGAGGAGGATTTTATCAGGAGAGCTCAAGGAAGACCACGTCCTATAATGTCTTCAGTCGAAACGGAGCAGCATCAGAGGCAACGTAAGAAGTCGAAGGATCCGTCAGAGCCTCAGATTGTGACCTGTCATAATTGCAACCAATCATTCACGTCGAAAGTACGACTCAAATTTCACATGCAATTCCACGAGAACTCGTCAATGATGTCAGATGGAGAATACAAGTGCGCACAATGCGCCGGCACCTTCCCTACGGAGACGCAGCTGTTCGACCACGTGCACTTCACGCACGAGAAGACGAGAAGATGGCAGTGTCCCGTGCATGGGTGCGGGAAGACTTTCTACCTGAGGGCAACATTGACAAAACACAGTCGCACGCACACAGACACGCGGCGTTACGTTTGTGTGACGTGCGGGAAACGCTTCCTTGACAAACAAACACTGGATGAACACGGAGTTACACATTTACAGataaaacCCTACCAATGTCACATCTGCCTGAAACAACTAACCCGAGTCTCCCGACTTCGAATGCACGTGAGAGCGCATGAGGAGGAGCTGGCTCCGACCCTGCTTCTGGTCTGCAGAGTGTGCTGCAGGGCGTTCAGGGGGGAGAGGGAGGCACAGgAACATGCAACGACATACACAGAATGTATAGAAGCGATCACGGAAGTGAAGACCGAGGAAGAAACAGCGGTACAACTGTCGCCCACCAGTGGGATTGTGAGGCAGACCATACAAGTCATTGAGTGCCCCTCCCCTAAAACCAAAGTACCAAGACAAGTAGCATCGCCGGTGGCTGCGCCGTTGTTATCAACATTGACAGAAGAAGCATTACCACTGATAAGAGTTGTGGAGGTTGAAAAGGCGTTCCGTTGTGAATATTGTGAAGATGTGTTCTACATAGAAGACGGCCTGAACGCCCACCGAGCTATACACAAGGGTGTCAAAAATCCCTTCACATGTCACATCTGCAAAGTTAGCTTCGCAACTTATTCCAGatGCACAACACATAAAACAACTCACGGTTTCTACAAGCGTCCCGCCACAGGGGGCAATGACCCCAGCACTAACGTCGTTGGATATGGGGACTTCCCCACTGTCAAACATTTCCTATGCGAgGATTGTGGGCGGTCTTACCTCCACTGGACATATCTTCAAGTGCACAGAAGAATGAAACATCCCAATGAAAACTATCTCCATAGTTGTAATCAATGCGAAATGACGTTTCCTAatagCTGGAGTCTGGCTTATCATCGTAAGAAACTTCATGGAAAATTTGCTGCCGATGAGTCGAAGAATACTGTACAAAATTACAGGTAA
Protein Sequence: MSENVYQFLINLELNDPDMVQSYHQPLDNQPLNLDDDQLYVLDDGTQIRASQIHFDNEDAPLDLLLEQLPFVKVKDEEEAVPSDIYEDKIHKIIASPVPITDSSPKHGFINHVPFKLVCNNTTGFEAQFTKYLEASNKTYATLNNVTKKNKSPRSLIRDNFNDKEEFRYTREEILNMLKDAPVTSIPYENNEKKHVRKTDPTKMVQKSSTKAIDIEGLVIGDGGNRSCFICGKTVSNDKIYLFDKEDQKIHKCSPQKKMSTQLKIICESCLNDNFKPSRMKGANQFLNSDEYLVIRNNQQYIFQKTKNFKFRTETIDKRKDEFVKFEIGSDGEIVTKPIDDDVILVHDGRKDSSSDVEIVEADVDKIINNLEEADEDVKVFLGKYEGDEVNELKCRFCELIFSSVSEVIEHGETHKHVIEDDVVFPCPLCDYGYATFQWLRGHLLAAHDKKTVKTTESNKDAENNSTEENNSDSKTTCKNVPDMIIKTEVKQEAISSDDEIWIVQTGDDESQQVSQLLEAAKLDNNEDRSKKCHNCSITFPSSEALAAHKCRGKKRRSDDDTVFIPTEEDFIRRAQGRPRPIMSSVETEQHQRQRKKSKDPSEPQIVTCHNCNQSFTSKVRLKFHMQFHENSSMMSDGEYKCAQCAGTFPTETQLFDHVHFTHEKTRRWQCPVHGCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPYQCHICLKQLTRVSRLRMHVRAHEEELAPTLLLVCRVCCRAFRGEREAQEHATTYTECIEAITEVKTEEETAVQLSPTSGIVRQTIQVIECPSPKTKVPRQVASPVAAPLLSTLTEEALPLIRVVEVEKAFRCEYCEDVFYIEDGLNAHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPATGGNDPSTNVVGYGDFPTVKHFLCEDCGRSYLHWTYLQVHRRMKHPNENYLHSCNQCEMTFPNSWSLAYHRKKLHGKFAADESKNTVQNYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00662575;
90% Identity: iTF_00662575;
80% Identity: -