Basic Information

Insect: Epirrhoe alternata
Gene Symbol: Prdm1
Assembly: GCA_963565295.1
Location: OY751380.1:6149181-6153622[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4e-05 0.0027 18.6 2.5 1 23 810 832 810 832 0.99

2 5 1.1e-05 0.00075 20.4 4.9 1 23 838 860 838 860 0.98

3 5 2.5e-06 0.00017 22.4 4.3 1 23 866 888 866 888 0.98

4 5 0.081 5.4 8.2 3.1 1 23 894 916 894 916 0.97

5 5 0.00014 0.0095 16.9 0.1 1 22 922 943 922 943 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4e-05	0.0027	18.6	2.5	1	23	810	832	810	832	0.99
2	5	1.1e-05	0.00075	20.4	4.9	1	23	838	860	838	860	0.98
3	5	2.5e-06	0.00017	22.4	4.3	1	23	866	888	866	888	0.98
4	5	0.081	5.4	8.2	3.1	1	23	894	916	894	916	0.97
5	5	0.00014	0.0095	16.9	0.1	1	22	922	943	922	943	0.96

Sequence Information

Coding Sequence: ATGGTGATAGTTTATTGTTGTGTACAGTCGACAAGTGAGGAAGCCAGCACGACAGTGGGCCGCACCGGCAGCCCGGCGGGCGCGGTGGCGGTCAGCGCGGTGCCGAGCGCGGGCGCCTACGATGTCACCCGGATGCGGGAGGAAGAGTTCGAGAGGCTCACCGTGTACATCGTCCCCGACGTGCCCTGCGACCGAGGAGTCCCTAACAGAGCCGAGAGGACGCTGCCCCGCAGCCTGACCCTCAGACCATCTGCAGTATTGTCCACTCCGAACACACCGACTGAAGGTGTTTGGAGCATAGGCGTTATCCCAAAAGGAACACGATTTGGGCCCTTTGAAGGGACTCGCACTCCAAACAAACCCAATGATAAAGTTTCCTGGCGGTACTACTGGAGGGTACAGGAAACTGTCAGACATCATACTTATGGAAATATAAAGATTTTCAAAGACAGTGACTATTATTACCTGGATGGATCGGACACGAGCGTTGCCAACTGGATGCGGTACGTCGCGTCGGCGTACTCCCTGCCCGTGATGAATCTCGTGGCCTGCCAGCACCAGGAACACATTTACTTCTACACGATACGAGATATTATGCCAAATGAAGAGCTAATGGTGTGGTATTGCAAAGACTTTGCAAGCAGACTGGGTTACGATATTGACCCTGAAAGAGCCACCTATTCTATTTgtaaGGAAGAGACTATCAAAAAAGCATATGGGATACCTCCTGCCCCCGTGCACCCTGAAATTGCGTTCAACCATATGAAATACGTTCTTGGTTTGACCAATGCCAAAGAACTACTAGAGGCAGAGATTCCTACCCGTCGTAGAAAACGTGAATCGAGTGAGAAACCGTTCCATGAGATTCCAAGCGTAATGCATCGAGAAGATCCAAGATGTGCCAATAAAAATGAGAGAGTAATCAGGACTGATATTTCAACAAATATTATTCATAATAAATCAGAAAATTCACTTATGAGTGAACCATTATCTCCTAATAGTCTAATGCCTTGTCCGTTGCCTGTGAAAATACATCACAGAGAAAACCCAACATTAATTATCCAACACAAAGAAAGTACATCCCATGTTGTGATCCACCAACTGGAAAACCCTAGACTACAAAGTAATAGATCTCCAGCTCAAAATCATCATTTGAGAGATGTTCGCGGGCCGTCACCGATGGCAATGAGTGGCCCAGACAAGTTAGGGAGCAAATCACCCAGCCTCACGCATAGTGCCGGCCCGCACTATGAACACCAACTGACGCCTAATGATGGATCAGTGAGATCTGACGAAGGTTACCACAGTAACGGATACCATGATGAGTTTACACCACCGGAAGATTCCAGTGACTCTGACGTAGAAAACTATGTTTTAGATTGTTCGAACAAAACAAATGAGCCCAAAGAAACTGTCATCGTCCAAAAAATGGACCAAGATGTAAACCGCAACGAATATagaaaagttaaaattaaaatgccAAAAGCTTACCAGTACCAAAATCATAAAGATATGGATTGTGAAAGTGAAAAGGAGTTGATAATTGCTGAGGAAGCCTCTGACGGGATTCCGCAGAACCTGTCCCCACCACGACGCGACCCAGCCACCTCCACCGTCATCGTGCTGGAGTCATCTCAAAATACCGTCGTACCCATAAACAAGCCGTACTATGAGGAAAGAACCTTGTCGCCGTCCCCACAACCTGCTTTCCTAAGATATACACCGCCAGATACCCGTATTTTAGAAACAATACTGACCGGAAATCGGATCGATACCAATAATAATGATCCTAACCGTCGCCAACCCAATGCGACTCCGCCACCCTCTTCTCCTACGGAAATGGCATACTCTTACAAGAAAAGCCAAAGATACGGCAACGTCTGCAGTCCGGACTCCAGCTCGAACCTAACGCCCCTGCCTTCTCTGCTGCCTCTGCCACAACAGTTGCCGACACCAAGCGCTGCTTCCATTTACTCATCATCACCACCGCACACGATCCCTCATACGACGGAAATTCGTGAGATCAGGGAAATCCGTGAAATCAGAGAAACGAGATACGAAAGCCACTATCCGAACTATTCGTATAATCTATATTCCCCACCAAATTCAACAATCATCACACAGCTAGGGTCTCCACCGAGCACGTATTCGCCGACAATCACTTCCTCTCATCAGTACGACAGAGCACAAAACGGACAAAGCAATCACCATTATCCGTCGTCAACCAGTGTTATAACACTGAAAAATTGTTCGCAACTGAGTTTGATTCAAAACTCACACATGAATAGCCAACTAGTACCGCACGGCAGCATGAGCCCAGATGAATCCTGCGGATTAATGATCGGTCCTCTAAGCCCTAACTCACAATCATCGCGTGGTTACAGGAGCTTACCATATCCGTTGAAAAAAAAAGACGGAAAAATGCACTATGAATGCAATGTATGTTGCAAGACTTTTGGACAACTATCAAATTTGAAGGTTCACCTTAGGACACATTCCGGTGAAAGACCTTTCAAATGCAACGTCTGCAGTAAATCATTCACACAATTAGCTCACCTGCAGAAACATCATCTCGTCCACACGGGAGAGAAGCCGCATCAATGCGATATTTGTAAGAAACGGTTTTCATCAACATCAAATCTGAAGACTCACTTAAGATTGCACTCGGGCCAAAAACCCTACGCATGTGACCTGTGTATGCAAAAATTTACACAATTCGTCCATTTGAAACTGCACAAGCGACTTCACACCAACGACAGGCCGTACGTGTGCCAAGGATgtgataaaaaatacataagcgCTTCCGGACTCCGAACGCATTGGAAAACGACAAGCTGCAAGCCTAACAACATCGAGGAAGTCTTAGCCATCACCAATGCTGCCAACACTGAATGCATAGGTACCGGTGAGAAAGACTGCCTCGACAGAGAGGGGCACGAAGGCTACGAGGTGCACTCGGCGTCGCAGGGAGGGCTGATGGGGCCTGGGGGGGCGCGCGTGCCGCTCGCGCACGGCGAGCTGCTGCAGCACGGGCACGGGCACACGCATGCTCACTCGACGACGACGGCGGCGCTGGGACCGCCGTCGCCGCAGTACCGCGCGCTGCTGGCCGAGCACGAGGCGCCGCACTACGCACCGCCGGTCGAGCCGCGCCCCAGCGTCATCGAGTCTAGCCAGCCGCTCATCATCGAGTGCACCTGA
Protein Sequence: MVIVYCCVQSTSEEASTTVGRTGSPAGAVAVSAVPSAGAYDVTRMREEEFERLTVYIVPDVPCDRGVPNRAERTLPRSLTLRPSAVLSTPNTPTEGVWSIGVIPKGTRFGPFEGTRTPNKPNDKVSWRYYWRVQETVRHHTYGNIKIFKDSDYYYLDGSDTSVANWMRYVASAYSLPVMNLVACQHQEHIYFYTIRDIMPNEELMVWYCKDFASRLGYDIDPERATYSICKEETIKKAYGIPPAPVHPEIAFNHMKYVLGLTNAKELLEAEIPTRRRKRESSEKPFHEIPSVMHREDPRCANKNERVIRTDISTNIIHNKSENSLMSEPLSPNSLMPCPLPVKIHHRENPTLIIQHKESTSHVVIHQLENPRLQSNRSPAQNHHLRDVRGPSPMAMSGPDKLGSKSPSLTHSAGPHYEHQLTPNDGSVRSDEGYHSNGYHDEFTPPEDSSDSDVENYVLDCSNKTNEPKETVIVQKMDQDVNRNEYRKVKIKMPKAYQYQNHKDMDCESEKELIIAEEASDGIPQNLSPPRRDPATSTVIVLESSQNTVVPINKPYYEERTLSPSPQPAFLRYTPPDTRILETILTGNRIDTNNNDPNRRQPNATPPPSSPTEMAYSYKKSQRYGNVCSPDSSSNLTPLPSLLPLPQQLPTPSAASIYSSSPPHTIPHTTEIREIREIREIRETRYESHYPNYSYNLYSPPNSTIITQLGSPPSTYSPTITSSHQYDRAQNGQSNHHYPSSTSVITLKNCSQLSLIQNSHMNSQLVPHGSMSPDESCGLMIGPLSPNSQSSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCSKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCMQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNIEEVLAITNAANTECIGTGEKDCLDREGHEGYEVHSASQGGLMGPGGARVPLAHGELLQHGHGHTHAHSTTTAALGPPSPQYRALLAEHEAPHYAPPVEPRPSVIESSQPLIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01429430;
90% Identity: iTF_01220137;
80% Identity: -