Basic Information

Insect: Epirrhoe alternata
Gene Symbol: -
Assembly: GCA_963565295.1
Location: OY751378.1:5376805-5378995[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.81 54 5.1 0.3 3 23 39 59 38 59 0.97

2 8 0.058 3.9 8.7 1.2 2 23 163 185 162 185 0.93

3 8 1.7e-05 0.0011 19.8 0.7 1 23 198 221 198 221 0.97

4 8 9.8e-05 0.0066 17.4 3.4 2 23 261 282 260 282 0.97

5 8 0.00098 0.066 14.3 5.4 1 23 288 310 288 310 0.97

6 8 9.4e-05 0.0063 17.5 4.3 1 23 316 338 316 338 0.97

7 8 1.5e-05 0.001 20.0 2.4 1 23 344 366 344 366 0.97

8 8 0.11 7.4 7.8 4.1 1 20 372 391 372 393 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.81	54	5.1	0.3	3	23	39	59	38	59	0.97
2	8	0.058	3.9	8.7	1.2	2	23	163	185	162	185	0.93
3	8	1.7e-05	0.0011	19.8	0.7	1	23	198	221	198	221	0.97
4	8	9.8e-05	0.0066	17.4	3.4	2	23	261	282	260	282	0.97
5	8	0.00098	0.066	14.3	5.4	1	23	288	310	288	310	0.97
6	8	9.4e-05	0.0063	17.5	4.3	1	23	316	338	316	338	0.97
7	8	1.5e-05	0.001	20.0	2.4	1	23	344	366	344	366	0.97
8	8	0.11	7.4	7.8	4.1	1	20	372	391	372	393	0.93

Sequence Information

Coding Sequence: ATGAGTGGTGATGCCGCATCGTTACCATGCCCGATATGCTCTCTTGGGGGAGTATTCGATTCGGCAGAAACTTTGCGAGACAGATTAATTCATGTTTcaactaataaaatattgtgtCCAGTGTGCCAAGAAGAAATTTGCGGATTGGATAAATTAACCATACACTTGTTCAGTCATGTTAAATCGATAGCAACAGGAAATCAAGACGTTACAAAAAGCAAATCTACTGGGAAAAAAGGTAAATTAAAACCAGAAAATGAAGCAGTAGCCCAACAGAAGAAACCAAAATCAGCAGCTAAAAATAGACCATCGCCTTCGATAGCATGTACACCTAtgaaatatgtaaaaatatatcCTAAGCTTCCAGTGATATCTTTGAATCCTGTACCCATCATCGATATATCCCAGCGACCAACAGAAAAGTGTATCCAGAATAGTGAACAATTAATTGTCAAAGATGAAGCTTCTGTGGAACAATCGAACACTACATGCAACGTGTGTGGCCTACAATttgtagataaaaatatattaaaaatgcaCCGATGCCTAATTCATAATATAGATGATACTTCGGCTGAAAGTTTTACACGTTACGATTGTCATTTATGCccgaaaaattttaaaatgcgtGGGTCATTGATGGTTCACTTGAGGGTGGCACATTATGGTGTTCTATGTGATAACAGCAATGTTGGTAGTGAGTCTCAAGACATAGTAGATGGGAAAACATCTGACCAACTTCAGAAAAATGTAGCAGACAGAAATGACAATAAACAATGGCAGTGTGATGTGtgtagaaaatattttacaactaAATACTTCCTGAAGAAACATAAACGACTTCATACAGGTGAAACTCCATATGCTTGTACGCAGTGCAACAAAACATTTACTTTTCAACAATCTTACCACAAACACCTGTTATATCACAATGATGAGAAACCACATTCATGTAGCTTTTGTGGTAGAGCTTTCAAAGAATTATCTACGCTTCATAATCATCAGAGGATACACACCGGGGAAAAACCTTTTGCGTGTGAAACatgtgGTAAATGCTTCCGGCAAAGAGTGTCATACCTAGTACATCGACGTATTCATACAGGTGTAATGCCATACAAATGTACAGCTTGCGAGAAAAGCTTCAGATACAAAGTATCGCAACGAACTCATAAATGCCAAGCACAGCCCCCTGGCACTGTTGTGAGACAAACTGGTGACCTCGTAGAAAAACTCAAAAAGAAACAAATAGATCCTGAAAACCAACTTAATCTAGATAAAAATAACGAAAAGCAAACTCCGTATCTAGAAATATCTGAAGCAAATGCAGAGCTAGCTCGGACAGGTGCAAAATTATCATTAGAAGATATGGAGACGGAGAGCTTTAGAATATTCGCTGAAACATTTAGTAACGAAGCTGAATCACACTGTTCTACATCCTGCCTTTCTAGTTCACTGGGTACTGACGTATTTAGACCTAAATGTAtccaaatatttgaagataataTCGAAGAACTAATAAACACAAACCTAGTTGAGGAAAAAAATGCACCATCGCCATCGGAAATTTTGAGGAACCTTTGTTTATCAAGTGAAGAAAGTGGTAATGATATTATTAAAGATTTCAGTGAATATCTATAA
Protein Sequence: MSGDAASLPCPICSLGGVFDSAETLRDRLIHVSTNKILCPVCQEEICGLDKLTIHLFSHVKSIATGNQDVTKSKSTGKKGKLKPENEAVAQQKKPKSAAKNRPSPSIACTPMKYVKIYPKLPVISLNPVPIIDISQRPTEKCIQNSEQLIVKDEASVEQSNTTCNVCGLQFVDKNILKMHRCLIHNIDDTSAESFTRYDCHLCPKNFKMRGSLMVHLRVAHYGVLCDNSNVGSESQDIVDGKTSDQLQKNVADRNDNKQWQCDVCRKYFTTKYFLKKHKRLHTGETPYACTQCNKTFTFQQSYHKHLLYHNDEKPHSCSFCGRAFKELSTLHNHQRIHTGEKPFACETCGKCFRQRVSYLVHRRIHTGVMPYKCTACEKSFRYKVSQRTHKCQAQPPGTVVRQTGDLVEKLKKKQIDPENQLNLDKNNEKQTPYLEISEANAELARTGAKLSLEDMETESFRIFAETFSNEAESHCSTSCLSSSLGTDVFRPKCIQIFEDNIEELINTNLVEEKNAPSPSEILRNLCLSSEESGNDIIKDFSEYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00662591;
90% Identity: iTF_00662591;
80% Identity: -