Ealt022722.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751402.1:6890672-6893571[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.073 4.9 8.4 0.4 1 20 102 121 102 123 0.94 2 15 5.8 3.9e+02 2.4 1.0 3 23 129 148 128 148 0.94 3 15 5.1 3.4e+02 2.6 1.4 1 23 153 175 153 175 0.88 4 15 0.013 0.86 10.8 0.4 3 23 181 202 180 202 0.94 5 15 0.0003 0.02 15.9 2.9 2 21 206 225 205 226 0.95 6 15 0.16 11 7.3 1.1 1 13 235 247 235 248 0.91 7 15 0.0019 0.13 13.4 2.1 2 21 347 366 346 367 0.93 8 15 0.015 1 10.6 0.1 2 23 372 393 372 393 0.94 9 15 0.66 45 5.4 0.6 3 23 400 421 398 421 0.93 10 15 0.0019 0.12 13.4 1.3 1 23 426 448 426 448 0.95 11 15 0.0025 0.17 13.0 5.1 1 21 451 471 451 472 0.95 12 15 0.00063 0.042 14.9 0.8 1 23 484 507 484 507 0.93 13 15 1.5e-05 0.001 20.0 1.2 1 23 513 535 513 535 0.98 14 15 0.0087 0.58 11.3 1.4 1 23 569 592 569 592 0.96 15 15 0.0015 0.1 13.6 0.6 3 23 602 623 601 623 0.96
Sequence Information
- Coding Sequence
- ATGGACGTCTCTCCTGGCTTGCCGCACTCACTCTGCCATGACTGTCTCACACACATCACATCTTTCACGCCATTCATAAAGCTATGCAAGGATTCTACCGCACACTGGTCTTATCTCTCTGAAAAACTGCTGGATGTGTCCATCCATAGCAAGTCTACAACTGCTTATATTTTCGTAAACGATACAATCCAAACTGTTATCCAGAGAGATAGAACTTTGAATATTAAAAGCGTCGTACAACGAATAAATCGAATTAGCAAAGACTTGCACCCACAAAACAACGACAGACAGAATTTAACAGATTTCACGTGTTCAGAGTGTGGTTCTAAGTATAGGAAGCTACGTAGGCTGAACCTGCATCTCGCTAACCAGAATAAGCGACTTTGCGCCCACTGCTATGAAACCGTGGATCTAAAAACATTTGCAGAACATCTTAAAACACATAACATCAGTTTCTTTGCGTGCGAGATCTGCTCGCTCCCATTCGAGTGTGAAAAACGATtagaaaaacataaaactttgcATATAGGTAGAAATATGTGTTCGGAATGTAAGAGGACATTCGCTACTGCTGATATTCTGACGTTGCACGTGCTTAGGAAACACGAAGCGGATGTCTGCAATACTTGCAACAAAAAGTTCACAAATCGTGTTTGCCTTTTCAAGCATATACGTTTCTGTAGATCTCAAATCCGAAAGACGTATATCTGCGATTACTGCTCAAAGGAATTTACAAATAGGACGGTTGATGAAGACCCCATCCTGCCTCCAGGGCTGTGCCGCGCTTGCGCAGATGACGTGATCACTTCCGCCAAGTTCAAACACCTTTGCGACAAATCCGCTCAGCGATGGAACGAGGCAGCCGGCAACTTCTCCAAGCTAGACCTAGAATGCGAAGACAAGACTATCTTCTTCATGTGCGCGGATAACGACATAGTCGTGTGCGAGAACAGGACAGAGTCAGTTGAATCGGCTGCTACACTCCTCTCCAAGTACAAGAAAGCTAAGAAAAGAGTGAGACGCAAAGAGTTTGCGTGTTGCTGTCCTTATTGTGGGAAGCAGTTTGTTACAGTGGATCTCTTCAACGAACACTTGAAGCTTGGAAAGAAGAGAGTATGCCGTGAATGCGGATTCGTTCTCAGCAAGTCTGAACTGGCGAAACATTTAAGGGCGGTACATCAGAAGGACTGTATAGACTGCAATATCTGCCACGACCTGTTTAATAGCTATAGTGACGCTAACTGGCATATGACGCAATCCCACGGCCCGAACTCTCACAGTTGTCAGGTCTGCGGGCGCGGATATAGAAACGAGAGAGGCTTGAGAGCTCATTTTTACTCTCATACTCTCTTTAGTTGCGAAGAATGCGGAAGAACCTTCGAGAACAACCGCTGTTACCGCCACCACACCAAAAAGTGCAGATCCGAACAGAAATCCACCTTCGACATGTATGAATGCCATGACTGCGGCTTGCAGTACGACAAGAAACCATCCCTCAAAATCCACATTGTACAGAAACACCTGAACGTGCTGCCGTTCGTTTGTCAGATTTGCGGGAAGCGTACATCCACCTTAGCTCACCTCAGATCTCACGAGAAGGTTCACCAAAAAGATAGACAGTTGTTCGAGTGTCATTGTGGGGCGAAATTCCGGACTTTGCTTGGACATCGCCTACATATGCGTATGCATAGTGGTCTGAAGCCGTACAAATGCAACCAATGCGAGGAGTCTTTCATATCAGCGTCACGAAGATTGGACCATACGAAACGGAGGCACAAGAGTACGAGGGAGCTAGCTCACGGCTGTGAGCAGTGCCCGGCTAGGTTCATACGCCCCTGGGAGTTACGGAAGCATTATATGCAGTGCCATCAGTCTGTCGATGTGATGATTTAG
- Protein Sequence
- MDVSPGLPHSLCHDCLTHITSFTPFIKLCKDSTAHWSYLSEKLLDVSIHSKSTTAYIFVNDTIQTVIQRDRTLNIKSVVQRINRISKDLHPQNNDRQNLTDFTCSECGSKYRKLRRLNLHLANQNKRLCAHCYETVDLKTFAEHLKTHNISFFACEICSLPFECEKRLEKHKTLHIGRNMCSECKRTFATADILTLHVLRKHEADVCNTCNKKFTNRVCLFKHIRFCRSQIRKTYICDYCSKEFTNRTVDEDPILPPGLCRACADDVITSAKFKHLCDKSAQRWNEAAGNFSKLDLECEDKTIFFMCADNDIVVCENRTESVESAATLLSKYKKAKKRVRRKEFACCCPYCGKQFVTVDLFNEHLKLGKKRVCRECGFVLSKSELAKHLRAVHQKDCIDCNICHDLFNSYSDANWHMTQSHGPNSHSCQVCGRGYRNERGLRAHFYSHTLFSCEECGRTFENNRCYRHHTKKCRSEQKSTFDMYECHDCGLQYDKKPSLKIHIVQKHLNVLPFVCQICGKRTSTLAHLRSHEKVHQKDRQLFECHCGAKFRTLLGHRLHMRMHSGLKPYKCNQCEESFISASRRLDHTKRRHKSTRELAHGCEQCPARFIRPWELRKHYMQCHQSVDVMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -