Ealt022124.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751402.1:1918960-1938889[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.3 87 4.4 3.1 1 23 239 262 239 262 0.95 2 19 1.6 1.1e+02 4.2 0.6 2 23 288 309 287 309 0.95 3 19 0.0016 0.11 13.6 1.0 1 23 329 351 329 351 0.99 4 19 0.01 0.69 11.1 0.1 1 23 355 377 355 377 0.88 5 19 0.029 2 9.6 0.6 1 23 381 404 381 404 0.94 6 19 7.6 5.1e+02 2.0 0.6 1 20 491 510 491 514 0.86 7 19 0.25 17 6.7 0.1 2 23 540 561 539 561 0.97 8 19 0.00013 0.0088 17.0 2.2 2 23 584 605 583 605 0.96 9 19 0.028 1.9 9.7 1.5 1 23 609 631 609 631 0.92 10 19 0.4 27 6.0 4.2 1 23 635 658 635 658 0.95 11 19 0.067 4.5 8.5 1.3 1 11 694 704 694 708 0.87 12 19 0.12 8.3 7.7 2.1 1 23 748 770 748 770 0.91 13 19 0.0064 0.43 11.7 0.3 1 23 839 861 839 861 0.97 14 19 0.0036 0.24 12.5 0.1 1 23 865 887 865 887 0.90 15 19 5.3 3.5e+02 2.5 0.7 2 22 892 912 891 914 0.74 16 19 0.0014 0.096 13.8 2.3 2 23 919 941 918 941 0.96 17 19 0.033 2.2 9.5 2.1 1 23 947 970 947 970 0.93 18 19 0.00018 0.012 16.6 1.9 1 23 976 999 976 999 0.96 19 19 1.2e-05 0.00084 20.2 0.5 1 23 1002 1024 1002 1024 0.98
Sequence Information
- Coding Sequence
- ATGGAGTTCGCCGATGTGACTGTGAAGGAGAGCCCTGGGCTGTGCCGATGCTGTCTATCCGAGGGCTGCTATAAAGACCTCGGCTCGGAGTATGCTTGGATGAATGACACAGAAGTTTATGCCGATATGCTGCTGGACTGCTTTGATATCGGCATAACCCAGCACAATGATGGCCCCAACGGCCCGAAGCGCCTCATCTGTGAGGTGTGCATCACACGGCTGCGAGACGCCTGCAACTTCAAGAAGCAGGTGGTGGACTCGGAGAAGAAGTTCATTGATATGCTCGGGCGCGGCGAGTTCCGCCATGTGGAGAAGCAGACAGTAATGCTGCCGATGTACACATCCGTGGCGCCGATGAAAGCTGAGAACATCGAGGAGGTGACTCTCAATGAGGACTATGACGACTCCCAAGTTGAGTTCCTGGATGACAACGATTTCACTGAAGATGagGAGCTGGTTAAGTCCGAAGGGCCATCCAACCCAGTACCAGTGGCGTCTACATCCGCAGTGAAACGAGGCCGTCCGAAGAAAACGGATAGCGAAGTACCGGAGAAGAAGCCGAAACTCAAGGGGAAATCCAAGATGCCCAAAGGTGGCAAACCAGAGGCATCGAGTAAGTCCTCAAGGTTCAGCCGGAGCCAAACCATTAAGGCGAACATAGCAGCCATTCTCCAAAACACAACTGTGCTCCCTTTCAGATGGCACAAGCAGTTTTTCATGTGCTTCTACTGCCATCTACCGATACAAACATTCAGGAAGCTAAAAGACCATATGAATTTGCAACACAGAAGCCCGAACATCCCCTCTGTTGTTGCTCTATTGAAGAAAGATGAAAAAGTCAAAGTTGACGTCACAACCATATCTTGCAAAATCTGCAAACACGAGCCCAATAACTTCGATGCGTTGATAGACCATTTGAAGTCGCATTTCAAGCTGAAAACTAAAGCCGATATCGGAGTAATCCCATTCAAGCTCACAGACGGCTATAGATGCGCAGTTTGCAACGAGATATTCCAATATTTCGTGAAGCTTAACCAGCATATGAACAAGCATTATGGGAACTACGTTTGCGAAATCTGCGGGAAGTCATTCTTGAGCGGAGACCGCTTAAGATCTCACGCGCTTTTACACACAGCAAACTTCTCTTGTACACTTTGCCCTGAAACATttgatactaatattaaaagaaCTAATCATACCGCTAAAGTACATGAGAAAGAACAGAGTTTTAAATGCTATTTTTGCTCGGATTTCTTCCCTAGTAAAGTTAAAAGGGTTGAACATATAAAGGCAACGCATGGCATTGATATACCTGTGTATGACTGTCCGGTGTGTGCGTATCGTCCCGAGCCGGTGGCGAGCGGCGAGCAAGAATTCACATGCATTAAACGTAACCGCTTGGTTAAGCTGAATACCATTGCATTACTCCAGTATTCTAACATCTTCCCCTTTAAATGGCACAGGCAAAACTATCTCTGCTTCTATTGTAACACCCCGCAAAACACTTTTGATGCCCTCAAAAAACACAATGAGGCTGAACACAGAAACTTGAACCCTAAAACAATTGGGGTTCTGATTAAAACGGACGATAAGGTCAAAGTTGATGTCGCGTCTATTAAATGCAGTATTTGCGACTCAAAGCTAGAAGATATTGACGGATTACTAATGCATTTGAAGCGTCACGGCATTTATTTCTGCGAAACTGCTGGCTTTGGGATCATACCGTACAAGCACAAGTCTAATTGTTGTCAATGCGCGGTCTGCGGAGAATCATTCAAATACTACATCAAACTAAACCAGCACATGAATAAACATTTCGGTCAGCACGTTTGCGAGATCTGCGGCAAAACGTTCCTCAGCACTCGTCGCTTGAAGATCCACTCCCTTTCTCACGGCTCAGGGTTTCCCTGCAACCGTTGCACTGAAACTTTCCACTCTTACTCTAAGAGGAGGAATCATTATGAGAAGGCTCATGGGATTCCTATTTTCCACAAATGCGTTTACTGTCCAGACACCTTCCTGAATTATGGCGCAAGAACTCTGCATTATCGTAACGCTCATAATGTGGATATTCCGATTTTCAATTGCCCAGTATGCGGGAAAACTTTCCGGCTTTGCAGTGCCAAACCCGCGATGTCACCGAGCCTATCATCCACCCATCGCAACCGTTTAGTAAAGAAAAATGCGACTTTAATCATCCAAAACAGTACAGCCGTCCCTTTCAAATGGCATAGACAATTATATCTTTGCTTCTATTGCCATAAACCATTTCAAATCTTCTCAGAATTAAAAGCACACAATTCCGAACACGACACCTCAAGCGTTAAATCTTCCGTGTCGATCCTAAGAATGGACTGTAAAGTCAAAATCGATGTAGTGGCGTGGTCGTGCAAGCTATGCGATTTTAAACCTAAAAATGTAGGCGAGTTTGTGGAACATCTAAAAAATTTGCATAGCAAGATTTTCGAAAACACCGATTTCGGAGTCattccatacaaacatttggacGAATCATACGATTGTGCTGTTTGCGGGGACACCTTCGCGTATTTCATGAAGCTGAATCAGCATATGAACTCGCATTTCGGAAGCTATGTTTGCGATATCTGTGGCAAATCATTCTTAAGCAGTGCTAGGCTTAGAATTCACGCGGTTCTACACACAAATAAAGTCAGTTGCGAATTTTGCTCTGAAACATTCCGTTCCTTCGCGATCAAGAAATCCCACGTAAATAAAGTCCATGAACCTAGTATAACTTGCAAACATTGCAATGAAACCTTCTCTAGTTACAATCAAAGAAAAGTTCACCTCAAAATTGCACATAATCTCGGTCAGTTACACGCTTGTCCGGACTGTGGAAAAGAGTATTCATGCAAGAGTAGGATGGAGCAACATCTAAAAGAGGTTCATTATAAGGAGACTCACTTTAGCTGCACAATGTGTGACCAAAGATTCTTTTCTAATTGGAGATTGACTAAACACATGCGGGCGTCGCATAGGGAGTTTTCATGTGTTGTGTGTGACAAAAGTTTTGTTAAGTCGAGTATGTTGGATGAGCATATGAAAAGTCATGATTGA
- Protein Sequence
- MEFADVTVKESPGLCRCCLSEGCYKDLGSEYAWMNDTEVYADMLLDCFDIGITQHNDGPNGPKRLICEVCITRLRDACNFKKQVVDSEKKFIDMLGRGEFRHVEKQTVMLPMYTSVAPMKAENIEEVTLNEDYDDSQVEFLDDNDFTEDEELVKSEGPSNPVPVASTSAVKRGRPKKTDSEVPEKKPKLKGKSKMPKGGKPEASSKSSRFSRSQTIKANIAAILQNTTVLPFRWHKQFFMCFYCHLPIQTFRKLKDHMNLQHRSPNIPSVVALLKKDEKVKVDVTTISCKICKHEPNNFDALIDHLKSHFKLKTKADIGVIPFKLTDGYRCAVCNEIFQYFVKLNQHMNKHYGNYVCEICGKSFLSGDRLRSHALLHTANFSCTLCPETFDTNIKRTNHTAKVHEKEQSFKCYFCSDFFPSKVKRVEHIKATHGIDIPVYDCPVCAYRPEPVASGEQEFTCIKRNRLVKLNTIALLQYSNIFPFKWHRQNYLCFYCNTPQNTFDALKKHNEAEHRNLNPKTIGVLIKTDDKVKVDVASIKCSICDSKLEDIDGLLMHLKRHGIYFCETAGFGIIPYKHKSNCCQCAVCGESFKYYIKLNQHMNKHFGQHVCEICGKTFLSTRRLKIHSLSHGSGFPCNRCTETFHSYSKRRNHYEKAHGIPIFHKCVYCPDTFLNYGARTLHYRNAHNVDIPIFNCPVCGKTFRLCSAKPAMSPSLSSTHRNRLVKKNATLIIQNSTAVPFKWHRQLYLCFYCHKPFQIFSELKAHNSEHDTSSVKSSVSILRMDCKVKIDVVAWSCKLCDFKPKNVGEFVEHLKNLHSKIFENTDFGVIPYKHLDESYDCAVCGDTFAYFMKLNQHMNSHFGSYVCDICGKSFLSSARLRIHAVLHTNKVSCEFCSETFRSFAIKKSHVNKVHEPSITCKHCNETFSSYNQRKVHLKIAHNLGQLHACPDCGKEYSCKSRMEQHLKEVHYKETHFSCTMCDQRFFSNWRLTKHMRASHREFSCVVCDKSFVKSSMLDEHMKSHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -