Ealt022144.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751402.1:2076827-2085594[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.053 3.5 8.8 0.8 1 23 242 264 242 264 0.95 2 10 1.1 71 4.7 0.0 3 23 292 312 290 312 0.92 3 10 0.024 1.6 9.9 0.2 1 23 332 354 332 354 0.95 4 10 0.0013 0.086 13.9 1.7 1 23 358 381 358 381 0.97 5 10 0.34 23 6.3 0.7 1 19 386 404 386 409 0.89 6 10 0.54 36 5.6 1.6 1 21 415 435 415 438 0.82 7 10 2.4e-06 0.00016 22.5 2.0 1 23 445 468 445 468 0.97 8 10 0.0007 0.047 14.7 2.3 3 23 476 496 475 496 0.97 9 10 1.2e-06 7.8e-05 23.5 1.1 1 23 502 524 502 524 0.98 10 10 1.8e-05 0.0012 19.8 2.1 1 23 530 552 530 553 0.96
Sequence Information
- Coding Sequence
- ATGGAAAATGATTCAGAGGACATACACAGCTTTGGAGAGTGCCGATGTTGCCTGGCAAAAGGCACGCACAGGGATATTCAGCAAGAATACTACCACAACGGAGTACGAGAAGTGTACAGAGACTTATTCGTGGAAACTTTCAATTTATCTTTATCAGAAACCAAAGGCCTGACTACCCTGCTGTGCACAAGATGCATCTCTCGGTTGCACGATGCTCAGTCACTCCGAGCTCTGGCTATCCGCACGGAGAGCCATCTTCTGGATGCTATCAAGAAGAACATGGAATTTGTTGATGTGTCAGCTAACAAGGAACCAACCGGGGATGTGAAATGGGAGATACATATCAAGGAGGAGCTCTCTGATCACATTGATGTAGAACCTACCTATGATTCCGACTACTTATCAGTCAGCGAATGTGTTGAATCAAAACAGGACCTTATTCCGGGTGAAGCGGAACTACTGGCACGCTTCAGTAGTACGTCACGATTACCGACGCGCGCCGACCTGACGCGTGTCATGCCTAACTTTGTACGTCACTTGGAGATTCTTAAACATGGGCACGTGAGTGCGCACAGTATCTCGCTGCGCTCGCCGGCGCGAgtggcgggcgcgggcgcgggcgcgggcgcggcgcgcgaCCAGAAAGCTGCGCACGCGCACAACGCTACCACACTCATACGGTATTCCAATATGACGCCGTTTAAAAGCAAGCACCGCGATGGCTTCCCCTGTTTCTACTGTCGCAGTGTATTCGACAACTTCACACTGTTGAAGGAACACACCGCGGAACACAAGCATTCTGAACTACCCAGGGTTTTCAAATACTTTGGCCCAGAAAGCCTGATAGTATACGCGGATGTGACCGATCTGGCGTGCACTATCTGTGGATCGGCGATGCAATCCATCCCCGATCTAAAGAAGCATTTAAGCATACACGGCAAGACTTTGTACGACGTAGGAGATAGAGTGATACCATTTCTAGTTGGTGAACAATATCTATGTCCGATATGTTCCAGTCGTTATGAAACATTTGGTTCTATAGAACGGCATATGAATGGACATTTTCGGAATTATGTGTGCAAGGTTTGTGGCAGTGGCTACGCAACGAAATACAGGCTGAAAGTACACCACAAAAGCATGCACGTCGAAGGCAAATTCGAGTGCGCGGTCTGCGCTAAAGTATTCGCCACAGCGCAGAAACGTACGAACCATTGCAACGCGGTACACAAGATGAAGAAACGATTCAAATGCAGCAAATGCAGCGAGCGTTTTGTCGAATACTTCCGTCGGCAGAAACATTTAGTAGAAGTTCACGGTTTAGCTCCATTAAAATATaactgcaatgtatgtgatcgCTCATTTGACAGACGTTACACACTATCAAGACATTTGAAACGTGATCATCTTGAGGAACGAGAAAATATATGTAATATATGTAACTATAGTTGCTTCACGAAGAACGAGTTGAAAGTGCATATGGTAAAACATACTGGGGAGCGGATTTTTGAATGTGCTGTCTGTAAGAAGTCGTATGCGAGGAAGAAGACGTTGAAAGAACATATGAGGATACATAATAATGATAGGAGGTTTGTCTGTCCCGCGTGTGGGCAGGCGTTTGTGCAGAAATGCAGCTTGAAAGGACATATGAAAACGCATCATTTTGAATATAGTATGCCTTAG
- Protein Sequence
- MENDSEDIHSFGECRCCLAKGTHRDIQQEYYHNGVREVYRDLFVETFNLSLSETKGLTTLLCTRCISRLHDAQSLRALAIRTESHLLDAIKKNMEFVDVSANKEPTGDVKWEIHIKEELSDHIDVEPTYDSDYLSVSECVESKQDLIPGEAELLARFSSTSRLPTRADLTRVMPNFVRHLEILKHGHVSAHSISLRSPARVAGAGAGAGAARDQKAAHAHNATTLIRYSNMTPFKSKHRDGFPCFYCRSVFDNFTLLKEHTAEHKHSELPRVFKYFGPESLIVYADVTDLACTICGSAMQSIPDLKKHLSIHGKTLYDVGDRVIPFLVGEQYLCPICSSRYETFGSIERHMNGHFRNYVCKVCGSGYATKYRLKVHHKSMHVEGKFECAVCAKVFATAQKRTNHCNAVHKMKKRFKCSKCSERFVEYFRRQKHLVEVHGLAPLKYNCNVCDRSFDRRYTLSRHLKRDHLEERENICNICNYSCFTKNELKVHMVKHTGERIFECAVCKKSYARKKTLKEHMRIHNNDRRFVCPACGQAFVQKCSLKGHMKTHHFEYSMP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00662527;
- 90% Identity
- iTF_00662527;
- 80% Identity
- -