Ealt019596.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751397.1:3560700-3562097[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.005 0.33 12.1 0.6 3 23 146 166 145 166 0.96 2 10 2.5 1.6e+02 3.6 1.2 2 23 173 193 172 193 0.89 3 10 0.2 13 7.0 0.3 2 23 209 229 208 229 0.93 4 10 1.2 80 4.6 0.3 2 23 241 262 240 262 0.86 5 10 0.0052 0.35 12.0 0.7 2 23 278 298 277 298 0.95 6 10 2.7e-05 0.0018 19.2 0.3 1 23 305 327 305 327 0.97 7 10 0.00077 0.052 14.6 2.0 1 23 333 355 333 355 0.99 8 10 2.3e-05 0.0016 19.4 1.2 5 23 364 382 361 383 0.93 9 10 1.8e-05 0.0012 19.8 0.5 1 23 390 413 390 413 0.96 10 10 0.00017 0.012 16.6 0.3 1 23 419 442 419 442 0.97
Sequence Information
- Coding Sequence
- ATGCTAAACGAAGACGCGGAATACTTACAATACGATAGTAATTATGGTGAATCTAGTCCGACAGTTAGTACCAACTTGCTAAGCTATCAGATCTCAGACTCAAAAGAGCCCCGCGAAACAATGATTACATTTCCTGATGAAGAGGAAGAATTCTCTGATACCGAGATCAAATTCATGCTTGATGGTGAAAGTGAAGCTGAAGCTGATACTATTGTTAAAACTGAAGATTGTAAAACTGAAAATGCAGAATCAAGCGATCAGGAACTTTTTGAAAATCGTATTTACTTGGAGTATGAGTCTGATAATGAATCTGTAGGCTCTGAACTTAAGTCCAACAGCGTTATTGAAACTTTAAGTATCCCAGAGAGTGAAGAATCAGACCCTGAGGAGCTTAAGTCGCTGGTTGAGTCTTACAAAACACACAAATTCCCACACTGCTATGTTTGCGGTTTGACTGTAAGAACATCAGAACAGCTCATTGAACATAGCTTAACACATCGCTCCCAGGAAATTGTAACATGTGAAGTTTGCAAAAATATTATACACAAAGATTTATACAAAACCCACTTGAAAGTTCACAGAGAGTTATACAACAAGAGGTTGGAAAAAAAGTACCAAAAAACTGAATGTACTGTTTGTGGGAAATATGTTGGCAAAAGTTACATGAAGGTTCACTTGTTGCAACATGGCACGGAAGAAGAAAAGGCAAAGAGATTCAAGAAATGTATGATCTGTAATGCTGATATTTCTGTATCTTACTTGACAGATCATATGAAGCGTGTACACATGCAACACAAGAAACCCAAAGCtgatatacctaataaaaaattaaaatgtcctGTATGCTTCCGGATGTTCAGGGAAAGTACATACAAGAACCATGTGGCGAGTCATGCAAGCACTTGCAGAAAGTATATCTGTGAAGAATGTGGTCGAGAATTCTTTTCCAAATCAACATTGTCAACGCATGCACTAATACACAAGGAAgtgtataaatataaatgccAATTCTGCCCTTACCGAGGAAAACATTTGGGTCTTTTAAAAGTCCATGTCCGCACTCACACTAAAGACTATTCATACAAATGTGATTGTGGAGCAAGTTTTATCACCAAGAGTAATCTCAATGCCCATCAGAAGGTTCATCATTCTGTTTACAGACTCAAGTTCATATGTTCGCAGTGTGGGAAAAGCTACTCAAAGGAGAGGACATTACAGAGTCATATAGAATCCATTCATGAGGGAATAAAGGATTATGCATGTAATGTGTGTGGTAAAAAATATGGTACTAAAGTTGTTTTGACTGCACATAAAAAAAGAGTTCATAATATTGTGGGACCTAGTCGTGTTGGATTAACACCATCTTATTTAGGAGCACAAGGAAATGAACACAGCTAG
- Protein Sequence
- MLNEDAEYLQYDSNYGESSPTVSTNLLSYQISDSKEPRETMITFPDEEEEFSDTEIKFMLDGESEAEADTIVKTEDCKTENAESSDQELFENRIYLEYESDNESVGSELKSNSVIETLSIPESEESDPEELKSLVESYKTHKFPHCYVCGLTVRTSEQLIEHSLTHRSQEIVTCEVCKNIIHKDLYKTHLKVHRELYNKRLEKKYQKTECTVCGKYVGKSYMKVHLLQHGTEEEKAKRFKKCMICNADISVSYLTDHMKRVHMQHKKPKADIPNKKLKCPVCFRMFRESTYKNHVASHASTCRKYICEECGREFFSKSTLSTHALIHKEVYKYKCQFCPYRGKHLGLLKVHVRTHTKDYSYKCDCGASFITKSNLNAHQKVHHSVYRLKFICSQCGKSYSKERTLQSHIESIHEGIKDYACNVCGKKYGTKVVLTAHKKRVHNIVGPSRVGLTPSYLGAQGNEHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -