Ealt006299.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751381.1:519669-539270[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0028 0.19 12.8 3.5 1 23 379 402 379 402 0.96 2 14 1.5e-05 0.001 20.0 0.8 2 23 594 615 593 615 0.97 3 14 0.45 31 5.9 2.5 1 17 620 636 620 648 0.93 4 14 0.45 31 5.9 2.5 1 17 653 669 653 681 0.93 5 14 0.45 31 5.9 2.5 1 17 686 702 686 714 0.93 6 14 0.45 31 5.9 2.5 1 17 719 735 719 747 0.93 7 14 0.45 31 5.9 2.5 1 17 752 768 752 780 0.93 8 14 0.45 31 5.9 2.5 1 17 785 801 785 813 0.93 9 14 0.45 31 5.9 2.5 1 17 818 834 818 846 0.93 10 14 6.9e-05 0.0046 17.9 1.1 1 23 851 873 851 873 0.97 11 14 2.7e-06 0.00018 22.3 0.8 1 23 879 902 879 902 0.96 12 14 6e-07 4.1e-05 24.4 1.4 1 23 908 930 908 930 0.99 13 14 3.9e-05 0.0026 18.7 3.2 1 23 936 958 936 958 0.99 14 14 1.2e-06 8.1e-05 23.4 1.0 1 23 964 986 964 986 0.98
Sequence Information
- Coding Sequence
- ATGAGGAACGTTGAAGCGCATATCCTGGGGGATAAGATGGACGAGGCAGTCACACATTATATAAATACGCATCAACCAAGCGAGCATGTCCACATAGACACAGATGGAATGCCCATGACAGTGCAGGATGATGGCAGTAGAATCACAGTGATGCACCAGTCCTACTCTTCACATCTCTGCAGGCAAGTGTCAGTGAGCGAGCATGTCGGCGAAGGACCATGGGGTGAGGAGTTGTTGGATCCGGAAGGTCGTATCGCGGCTATAGTGGCGCATCTGTCCCAAAACCCAAGGACATCGCATCACCAGCCCCATCCTCATCACAAGATGCCTGCGAGAAGTGAAGTGGATACAGTTATATTAGATAGCTCTATAAGATTCAATGGACAAGCTCTGgATCAACAATCGGTGACGTTAGCGACCTTGCCGCCGATGCAGACGCTGCCGCAGCTGCAGGAGTTGAAACGATGCCAGGACAACGACTGGTTCACAGATAAGAACAAAAAGAGCGAGTCACTAAGTCAGTTGACGGAGTCAGACGGGGTGCTGGAGCTAGGCTCGCCGGCGCCGCGACAGCCGAGCAGGAAGAGTCTGCCGCATAAGAAACGGATCTCACGGAAACTTAGGAGGAATGGTGGATCCACTCCACAGCAGGATTTGGTGGTGATCAACAACATAGAACCGGTGGTGACTCCCGTGGTGGAGGAGCAGATCCTGCCGGACAACTTCGTGCCGGTGCAGCAACAGTCGCATCACATATCGCATGAGGTCCGGCCGATATTCATATGTCAGATCTGCGGCGACTTCTACGGCGAAGAACAGCTCAAGTTCTTCCATCACCTGAAGCAGCATTACGAGCCGCATTCCGCCATCATCATCGACAACCCCGTCTCCGATCTGGTGATGGACAAGATGACAAACACATGTATAGTGGACAATGTGGCAAACCTCCCCGACTCCATAGTGGAGCTGTCTCTCGAAGGCTCCGTCCCTAAGACCATGTACCAGAACATTGAAAAGCATTCCATGCCTCTTAGCTACAATAATATTAAGGTGCAATACTCAATGGCGAGTATGGAGAAGGAACCGCCCGTAGAGAAGGCAGATCTATACGACTCGTTAGATAAGCTAGAGTTGTACAACTGCGGGAAGTGTAGCAAGACTTTTCGGAAGCAGAAGCAGTGCGAAGCGCATATGAGAGAAGCGCATCCTactaagTTAGAAGATATGGGCGAGTTCAGCGAGCCGGAGGATCTAATGGCGGGTATACACGTGTGCGTGGGCGAGTACGAGCCTCCGCTACTGCCGCATCTCACCGTCGACAACGGACATGTCCACCAGGATCACACGAGACATTGGTACTCAAGAAACGGCTCTCAGGACCCATGCGAAGGCTGCGCCGACTGCAACACAGATAACTACTGCGCCGACTGCGACAGACAGCCCTCTCACTCGCACGTTCCCTCCCACTCGCACAGTGAGGCCACACACACGATGGACAGTGAGGCTACACACACTGCGCTAAGTGTTCCGCATTCGCAAAGTCATTTGACGCATTCGCATAGTCAGGCGCATGATCAGCCGCTGAAAATTCTCaaagAGGAAGTTTTACAAAGGATACTAGAGACAGAAGTACCAACATCACTTCCATACAACATGATGGAACAGAGTCAGCCGAACGAACCCTCGCCCGACCGAGAAGAGCCGAACAAATACGAAGATAAACATGACGTCATTGTTAAAACCGAACCGTCGAAGAACAATGGCAAGCGTAAAAGGCTAGAATGCAGCGAGTGTGGTCGCGTGTTCGCGCATCGCAACAGTCTGATGTACCACATGCTGTCGCACGCGGCCCGCCAGCACTCCTGCTCGCTCTGTCCCAAGACATTCTTCACTGCGGCCGCGCTCAAGGTACGCAACAGTCTGATGTACCACATGCTGTCGCACGCGGCCCGCCAGCACTCCTGCTCGCTCTGTCCCAAGACATTCTTCACTGCGGCCGCGCTCAAGGTACGCAACAGTCTGATGTACCACATGCTGTCGCACGCGGCCCGCCAGCACTCCTGCTCGCTCTGTCCCAAGACATTCTTCACTGCGGCCGCGCTCAAGGTACGCAACAGTCTGATGTACCACATGCTGTCGCACGCGGCCCGCCAGCACTCCTGCTCGCTCTGTCCCAAGACATTCTTCACTGCGGCCGCGCTCAAGGTACGCAACAGTCTGATGTACCACATGCTGTCGCACGCGGCCCGCCAGCACTCCTGCTCGCTCTGTCCCAAGACATTCTTCACTGCGGCCGCGCTCAAGGTACGCAACAGTCTGATGTACCACATGCTGTCGCACGCGGCCCGCCAGCACTCCTGCTCGCTCTGTCCCAAGACATTCTTCACTGCGGCCGCGCTCAAGGTACGCAACAGTCTGATGTACCACATGCTGTCGCACGCGGCCCGCCAGCACTCCTGCTCGCTCTGTCCCAAGACATTCTTCACTGCGGCCGCGCTCAAGGTACGCAACAGTCTGATGTACCACATGCTGTCGCACGCGGCCCGCCAGCACTCCTGCTCGCTCTGTCCCAAGACATTCTTCACTGCGGCCGCGCTCAAGATCCACAAGCGAGTGCACAACGGCGACAAACCTTACAAATGCGAGTTGTGTGGACGCAACTTCAGGCAGTGGAGCGATCTCAAGTATCACACCATATCTCTGCACTCTGATGAGAAACATTTCAAGTGCGAGTTCTGCGGCAAGGAGTTCGCCAGAAAGTATTCCCTGAACGTGCACCGCCGCATCCACACCGGCGAGAGGAACTACAAGTGCGACTACTGCACCAAGACCTTCAGCGCATCTTCCTACCGCCTCACGCATATGCGGACGCATACTGGTGATCGTCCATACAAATGCGAGCAATGCGAGAAGTCCTTCCGATCCGCCTTCGACCTCCGTCGCCATCTTCTAGTCCACGACAAAATACGCAACCGCTTCGACGAACACAAACCCAAGCCCAAAGACAAGAAGCCCAAACCagagaaagaagaaaaagaaaccaCAATAgaagataaaataaagaaaCCAGAACCAGAACACGAACCGACTATCCTCAAAAAAGCTCTGAAGAAAAAACCTCTTGCGAACAAAAAAGGCGCTCCGAACGTCACAGTTCAAAATCGTGATGGACAATTCAAAATCAACGAATACCCGAACGAAGACTCGAATGAGCGACCGCAGTTCACGAAATTCAAAATCGTGTACAGCGACGAGTTCAAAGATGCACACAAAAATCAACTCTATAAAGATACGGATAGAGAAGGTTTCGCTGTGCTCAGGCCGTTGCGAGATGACAGATATAGAGAGAACACTGATGGTAAACTACAAATTTTTACTCATGTGGAAAAGAGTAAGGACTATGGTGGGACCATCGTGTCTAACTCTCAAGTGTTGGGTGATATCAGGCATTTGGAACGAGAGGTAGCGAGGGAGGTGAGAGCTGATGGGACTATGAATGGGGAGGTTATGGAAAATGCGTTCTTGGAACGATTGACTGAGTTGTATAATGTGCCCCCTGTATGA
- Protein Sequence
- MRNVEAHILGDKMDEAVTHYINTHQPSEHVHIDTDGMPMTVQDDGSRITVMHQSYSSHLCRQVSVSEHVGEGPWGEELLDPEGRIAAIVAHLSQNPRTSHHQPHPHHKMPARSEVDTVILDSSIRFNGQALDQQSVTLATLPPMQTLPQLQELKRCQDNDWFTDKNKKSESLSQLTESDGVLELGSPAPRQPSRKSLPHKKRISRKLRRNGGSTPQQDLVVINNIEPVVTPVVEEQILPDNFVPVQQQSHHISHEVRPIFICQICGDFYGEEQLKFFHHLKQHYEPHSAIIIDNPVSDLVMDKMTNTCIVDNVANLPDSIVELSLEGSVPKTMYQNIEKHSMPLSYNNIKVQYSMASMEKEPPVEKADLYDSLDKLELYNCGKCSKTFRKQKQCEAHMREAHPTKLEDMGEFSEPEDLMAGIHVCVGEYEPPLLPHLTVDNGHVHQDHTRHWYSRNGSQDPCEGCADCNTDNYCADCDRQPSHSHVPSHSHSEATHTMDSEATHTALSVPHSQSHLTHSHSQAHDQPLKILKEEVLQRILETEVPTSLPYNMMEQSQPNEPSPDREEPNKYEDKHDVIVKTEPSKNNGKRKRLECSECGRVFAHRNSLMYHMLSHAARQHSCSLCPKTFFTAAALKVRNSLMYHMLSHAARQHSCSLCPKTFFTAAALKVRNSLMYHMLSHAARQHSCSLCPKTFFTAAALKVRNSLMYHMLSHAARQHSCSLCPKTFFTAAALKVRNSLMYHMLSHAARQHSCSLCPKTFFTAAALKVRNSLMYHMLSHAARQHSCSLCPKTFFTAAALKVRNSLMYHMLSHAARQHSCSLCPKTFFTAAALKVRNSLMYHMLSHAARQHSCSLCPKTFFTAAALKIHKRVHNGDKPYKCELCGRNFRQWSDLKYHTISLHSDEKHFKCEFCGKEFARKYSLNVHRRIHTGERNYKCDYCTKTFSASSYRLTHMRTHTGDRPYKCEQCEKSFRSAFDLRRHLLVHDKIRNRFDEHKPKPKDKKPKPEKEEKETTIEDKIKKPEPEHEPTILKKALKKKPLANKKGAPNVTVQNRDGQFKINEYPNEDSNERPQFTKFKIVYSDEFKDAHKNQLYKDTDREGFAVLRPLRDDRYRENTDGKLQIFTHVEKSKDYGGTIVSNSQVLGDIRHLEREVAREVRADGTMNGEVMENAFLERLTELYNVPPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -