Ealt022777.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751403.1:337211-344261[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.8e-06 0.00019 22.3 0.5 2 23 459 481 458 481 0.95 2 11 0.0028 0.19 12.8 2.8 2 23 488 510 487 510 0.94 3 11 0.0019 0.13 13.4 0.6 2 23 517 539 516 539 0.92 4 11 7.6e-06 0.00051 20.9 0.8 2 23 547 569 546 569 0.96 5 11 0.00025 0.017 16.2 1.2 2 23 577 599 576 599 0.95 6 11 0.05 3.4 8.9 2.6 1 23 606 629 606 629 0.96 7 11 0.00055 0.037 15.1 2.9 2 23 636 658 636 658 0.95 8 11 0.00068 0.046 14.8 1.4 1 23 671 694 671 694 0.96 9 11 7.8e-06 0.00052 20.9 0.6 3 23 704 725 702 725 0.94 10 11 0.00019 0.013 16.5 0.4 2 23 731 753 731 753 0.97 11 11 0.058 3.9 8.7 2.9 2 23 761 783 760 783 0.94
Sequence Information
- Coding Sequence
- ATGGATTTaccgttaaaaaaaaagatatatgCACAGAAGTATAGATCGGAATGGGAAAATGTAGATGAGTTCAAAGGTTGGTTAAAACCAGCAAGTGGAGACTCAACTAGAGCATTCTGTACATATTGTTCAATGGAAATAGTTGCCAAGCTGTTTGATATCAAGAAACATGCCCAGACgaaaaaacataaacaaaaagtGGAACTCAAAAGTGGTAATAAAGAGATTCCATTCAAAATTACTGCAAAAGAAAGTTCAAGCAGGCCTTCTGATGAAGCTGAAGGTGCTTTGACGTTATTTGTAGCAGAACATTGTTCTACTATGAGTGTAGACCACTTAGGCGAGCTATGCAGTAAGTGCTTCAAAGATTCAAAAGCCACCGATGGGTTAAAGTTACATCGAACGAAATGCACGGAAATAATGAAAAACGTGTTAGCCCCACACTTTCGCCAGGAACTTTTGGACGATATTGGAAACCAAAAGTTCAGTATTTTACTAGATGAGTCCACAGATGTGAGCGTCAGTAAACACCTAGGCCTGATTGCAATTAAGGCATTTGAGAGCGAAGATTCCAACCCATTGAAACTGCTGAACACTCTAAAAACACTTATACAGTCAGTAAGCCAGAGAATTCTAATGCCAACACGATTGCAGAGGAACATTTTGGATCCCATCACTGATACAGATTTAAATCCTAGACCTTTTCTTGGTTATTTGTTTGAAACAGAAATAACTAAACATTCATTTGATTCTGGGACTTCAAATGGAATAAGACAACGCTGCATCACATTTCTAAAGCGCCTGGTTACCGAATTGCAACAAAGGCTACCAGATAACTACAAACAATTAGAATCTATGCAGTTGCTAAGTCCTGAAGAGGCAGTAAAACAGATCAAAACGAATGATATTATGTATCTTGCTGAAATTTTAGGATTCACACCAGAAAAAATAGATAAGATAATGCAACAGTGGCATATTCTTCATACGTTCAAATGGGTATCACAAGAAATTATACCGTTttgggtggaagttaaaaagtACCAAAATGCATCTGGAGAGCATATATTTGAAGACATAAGTGAACTCGCTATAGCATGTCTTTCACTTCCGCATTCAAATGCTGAGAGAATGGAAGAAGTGTACATAAAATCAGAACAAGTTGAAGTAGAAATCAAAGTAGAGGAACCATCTGAAGCTGAGAAGCAAcaagatttaaaaaaagaatTCAATCAAGCAAATTATTCTATAAAAAGTGAAATAATTGATATTAAATTACAAGAAAATGTTTTGtcagataacaatgaatttccaGGACACGAACAGAAAATCGAAATCAGCGGAAAAGTTTATGAAAATGGCAAAATAAATAGAATACCATGCAGTGAATGTGTTAAGACTTTCAAAAACCGAGCTAATTTAAGAAACCACATGAAATATGTACATTCAGGTAACCATAGTGTGGAGTGCGCACAATGTTTCCGAACATTTAAGTCGCACGGACATCTGCGGTCACATCTGGACTCAGTGCACGCAGTAAACGAAGAGGTCAGCTGTAACATTTGTGACAAAGTCTTCCTAAACCCGAGGAAACTAAAAAATCACCTCTATTACACTCATCCGCAGCCCGATGAGCAAGTAAAATGCACTGTGTGTTTTAAGATATATAAATCTCAGTATAATCTTAAGATACATATGAGACTAGTTCACCCAGACGGGCAACAGTCTGTCTCTTGTCCATACTGTGAAAAGACTTTTAAAGTAGATATGTTGCTGCAACGCCATATAAAATGGTGTCATCCGGACGATGGAATGATTTACAAATGCCAGCAATGTTTTAAGGTTCTACCGTCTCTCGCTTGCTACAAAAAACATATAGAAAACACGCATGATATCAACTCGCGAGCCACGTGTCAACTTTGCCAACGCACTTTCAAAACCAAGAAGTCTCTCGACCGACATGTTAAGAACTTACATAACGGACAGGGCGTCAAAAACTATACTCCTAGTAAATTCATCTGCACGTATTGTGAGAGAGGATTCGAGAGTAATACCACTTTATTTTGGCACACACAGAAATATCATGTCAATGATTCAACAGAGACCACCCACTGCGAGATTTGTGACAAATCATACTCGGACAATGCATCGTTGCAACGACATCTAGCCTCAGTCCACTCTTTGGAGACTGCGACTTGTAATATCTGCATGAAAGAGTTCAAGTCTGCCATTAATCTGCAAAGTCACATTCGGATAACCCACGCTCCTCCAGAAGCTGTTCAAACATGTGATGTTTGTCAGAAAACCTTCAAATGCGCACTTCATCTACGGATGCATATCAACGCTGTACACACCACAGCCGAAGGCGCAGCAGGGCGAGCAGCCGAGGACGCAGCCAACGGCGCAGTCAAGGACGGCCCAGTCGGAGACCTAGCCGAGAAGACAGCCATCAACGCAGCCGTAGCCGCCTTCGCAGCCGGGCCTACTCTCGAGAGCGGAGCTACAGGCGGCTATCGGAACAGGAAAAGGAGCTTGATCGAGAGCGAGAGCGCCTGCGAATACGGGAGGATGAGGTACGCAAGGCTCGTAGTTTGTTGTCTGCCAATAGGCAGAATCTTAGTCGGGCACATCATGCTCCCGTGTCCATTCAAAGAGATCCCTCGACTTCACCGACTCGTGATCGAAAGCGAGCTCGTGTTGGCGACTTGGTAA
- Protein Sequence
- MDLPLKKKIYAQKYRSEWENVDEFKGWLKPASGDSTRAFCTYCSMEIVAKLFDIKKHAQTKKHKQKVELKSGNKEIPFKITAKESSSRPSDEAEGALTLFVAEHCSTMSVDHLGELCSKCFKDSKATDGLKLHRTKCTEIMKNVLAPHFRQELLDDIGNQKFSILLDESTDVSVSKHLGLIAIKAFESEDSNPLKLLNTLKTLIQSVSQRILMPTRLQRNILDPITDTDLNPRPFLGYLFETEITKHSFDSGTSNGIRQRCITFLKRLVTELQQRLPDNYKQLESMQLLSPEEAVKQIKTNDIMYLAEILGFTPEKIDKIMQQWHILHTFKWVSQEIIPFWVEVKKYQNASGEHIFEDISELAIACLSLPHSNAERMEEVYIKSEQVEVEIKVEEPSEAEKQQDLKKEFNQANYSIKSEIIDIKLQENVLSDNNEFPGHEQKIEISGKVYENGKINRIPCSECVKTFKNRANLRNHMKYVHSGNHSVECAQCFRTFKSHGHLRSHLDSVHAVNEEVSCNICDKVFLNPRKLKNHLYYTHPQPDEQVKCTVCFKIYKSQYNLKIHMRLVHPDGQQSVSCPYCEKTFKVDMLLQRHIKWCHPDDGMIYKCQQCFKVLPSLACYKKHIENTHDINSRATCQLCQRTFKTKKSLDRHVKNLHNGQGVKNYTPSKFICTYCERGFESNTTLFWHTQKYHVNDSTETTHCEICDKSYSDNASLQRHLASVHSLETATCNICMKEFKSAINLQSHIRITHAPPEAVQTCDVCQKTFKCALHLRMHINAVHTTAEGAAGRAAEDAANGAVKDGPVGDLAEKTAINAAVAAFAAGPTLESGATGGYRNRKRSLIESESACEYGRMRYARLVVCCLPIGRILVGHIMLPCPFKEIPRLHRLVIESELVLATW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -