Ealt022135.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751402.1:1991008-1994510[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00037 0.025 15.6 0.3 1 23 52 74 52 74 0.96 2 16 0.016 1.1 10.5 0.2 1 23 171 194 171 194 0.94 3 16 0.097 6.5 8.0 3.7 1 23 199 222 199 222 0.92 4 16 0.0077 0.52 11.5 2.4 2 23 228 250 227 250 0.95 5 16 2.1e-05 0.0014 19.5 0.4 2 23 258 280 257 280 0.96 6 16 0.0018 0.12 13.4 2.5 1 23 286 308 286 308 0.98 7 16 1.7 1.2e+02 4.1 5.2 1 23 419 442 419 442 0.94 8 16 0.014 0.91 10.7 0.0 2 23 469 491 468 491 0.96 9 16 1.3 89 4.4 3.9 1 23 513 535 513 535 0.97 10 16 0.26 17 6.7 0.2 1 23 539 562 539 562 0.88 11 16 7.2e-05 0.0048 17.8 1.8 1 23 568 590 568 590 0.98 12 16 0.00025 0.017 16.1 2.4 1 23 596 619 596 619 0.96 13 16 0.0002 0.014 16.4 0.1 2 23 627 649 626 649 0.96 14 16 0.0001 0.007 17.3 2.9 1 23 655 677 655 677 0.97 15 16 3.5e-07 2.4e-05 25.1 0.5 2 23 684 705 683 705 0.97 16 16 0.0062 0.42 11.8 3.8 1 23 711 734 711 734 0.98
Sequence Information
- Coding Sequence
- ATGACAAAAAGAGGTGATCAAGAAGAACAAGAACGAGGCAAACAAAAGCCGAGTAAATCTGTTTTCGAAGAATTAGATAAGCAAAGGCACAATTTGAAGCAAATACTGATGTGGACAAATGCGACGCTGATACGACGGCATACTGACAAGGGCTACGTGTGTGGCTACTGTCCGAAGCACTATGCAAAGCCCGCAGATCTTAAAGTCCATTCCCTAAACCATGATACGAAAGCGTTTACCTCTTACATGGCTAAAACCTGCCTTTCAAAATTCCTAGTCAATCTTGACGTCTCTGATTTAATATGCAATATATGCGAACAAAAAATTGATCAGACAGAAATCATAGACCATCTCACAGGTCACAAACAAAAAATGCATAGCGATATCAATAACTACATAGTGCCTTTCAAATTCGATGATGACGTACACGTGCACAAGTGTATCATCTGCTTCGAAGTTCATAGAACATTTAAAGCGCTGCAGTTACATATGCATGGACATTATAGGAACTTTGTTTGCGTAAAGTGTGACGCTGGCTTCGTAAACCAACAGAAGATGACAACGCATGTTCTAAACTCGCACAAAATCGGAAGCTTCACATGCAACAAATGTGGGGAGAAATTCGAGACCATGAAGAAGAAACGAACTCATGAAAATCATGCGCATTTAGAAAAGAGAAGCAAATGCGGTCACTGCGGGGAAAAGTTCAGAAGTTTCGATCTGAAACGTGTGCATCAAATAAAAATGCACAATATCAAAGATATCTTGTTGAAATGCAGCGCTTGCGACAGAAGCTTTACCAAACCGTCCCTACTATCCGCCCATATTAAGAAGGATCACTTAATGGAGACGAGATTCAAGTGCACCTATTGCCCAAAAGAATACTTTTATAAGTTCCTCTTAGATACGCATATGGTCAAGCACACGAATGAGAAGAATTTCAAATgtGACAGTGACGTCAAACCCATTAAAGTGGAAATAGAATGGGACGTAGACAAAAATATGGAAGTAAAAGCAATAAAGGAAGAGAAATTGTCATCAAAAGCCAGTAGGAAGAGGGAGAAAGGAATAACAAAACGGGCGGCAAAAAATAAGAAAGTTGACAATGTAAAATCAGAGAAATTCCAACCACTGAAAATCAAACCAGCAGCTAAAGCGGAGGTCTTAGATGTCGATAAACATCGATATAACGTACGGGCGATATTGCAGTATTCAAATGCGACCCCGATCAGAGCGCACTATGCCGGCAACGGCTACGCTTGCTGTTTCTGCAAACAGTACTTTCACAAAGCAGCTGATCTCAAGTCTCATACCTTGCAAACACACGACGATCaaactaaaagaaaatacaTGCAAAAAGCATTTCTTTTCAAACTATTCGTTAAACTCGATATTACGTTCTTGCGATGCTCAATTTGCTCAATCGAATTGGTCAATCTCGACGATCTTATCGAACACTTGAACACAGCGCACGATAAAGGCATTCACactgacgtacaaaatcaaattaTGTGCTTCAAATTCGAGAATGAAGGATACCGCTGTTTTATATGCTCTGTAGAATATcatagttttaaaaatttactAGAACACGCGCATTCGCACTATAGGAATTTCGTCTGTGACGTGTGCGATGCTGGATTTATCAATCGACTTAAGCTTTACGGACACgtgtacaataaacataaagGTGCAGGCTCTCATAAATGCAGTACATGCGAGAAAGTTTTCGACACTCCCATTAAACTGAAGACACACGAACGTATTCACTCTGGTTCGGTCCTTTACAAATGTCACGAATGCGGTCAAAAATTCCCTAAGAAGAAAGAAAAGAGAGATCATATGATAAACGCGCATGGAGCGGAATTCGCTCAAATCAAATGCACAGCTTGTGAAAAGGTGTTCATCAGTAAAGCGTCGCTTAGTGTCCACATTAACAGAGATCATCTTATGGATAGGAGACATCAGTGCGAGCTCTGCGAGAAAACCTTCTTCACATCCTCGTTTTTGAGAGATCACATGGTATCTCATTCTAGGGTACGGGAAATTCAATGTGATGAATGCCCTAAAACATTTGCTAGGAAGAAGGCACTTCGGGAACACATGAAATCACACACTGGTGATCGGAGGTTCAAATGTACTTACTGTGATATGGCGTTTTTGCAGAAATGCAGCTTGAAAGGACATTTGCGAAGTCGCCATGATGCTGAATTACAATGA
- Protein Sequence
- MTKRGDQEEQERGKQKPSKSVFEELDKQRHNLKQILMWTNATLIRRHTDKGYVCGYCPKHYAKPADLKVHSLNHDTKAFTSYMAKTCLSKFLVNLDVSDLICNICEQKIDQTEIIDHLTGHKQKMHSDINNYIVPFKFDDDVHVHKCIICFEVHRTFKALQLHMHGHYRNFVCVKCDAGFVNQQKMTTHVLNSHKIGSFTCNKCGEKFETMKKKRTHENHAHLEKRSKCGHCGEKFRSFDLKRVHQIKMHNIKDILLKCSACDRSFTKPSLLSAHIKKDHLMETRFKCTYCPKEYFYKFLLDTHMVKHTNEKNFKCDSDVKPIKVEIEWDVDKNMEVKAIKEEKLSSKASRKREKGITKRAAKNKKVDNVKSEKFQPLKIKPAAKAEVLDVDKHRYNVRAILQYSNATPIRAHYAGNGYACCFCKQYFHKAADLKSHTLQTHDDQTKRKYMQKAFLFKLFVKLDITFLRCSICSIELVNLDDLIEHLNTAHDKGIHTDVQNQIMCFKFENEGYRCFICSVEYHSFKNLLEHAHSHYRNFVCDVCDAGFINRLKLYGHVYNKHKGAGSHKCSTCEKVFDTPIKLKTHERIHSGSVLYKCHECGQKFPKKKEKRDHMINAHGAEFAQIKCTACEKVFISKASLSVHINRDHLMDRRHQCELCEKTFFTSSFLRDHMVSHSRVREIQCDECPKTFARKKALREHMKSHTGDRRFKCTYCDMAFLQKCSLKGHLRSRHDAELQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -